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Table 4 Indel and SSR molecular markers used for fine mapping of the lsl2 gene

From: Cloning of long sterile lemma (lsl2), a single recessive gene that regulates spike germination in rice (Oryza sativa L.)

Marker

Sequence of the forward primer

Sequence of the reverse primer

RM8059

GGAAAGACCAGTTTAGAGCAATGG

AGCTAGATCCCTTGTTTCACACG

RM427

TCACTAGCTCTGCCCTGACC

TGATGAGAGTTGGTTGCGAG

RM4098

CGTTTGGATGAAGAAGAAGA

AGTGTTCGTTTCGGATTAGA

Indel7–2

CAGATATGATGTTCTTGCCCTTGC

GCTTGCCAGATCACCTACCTACC

Indel7–3

CGGAGCTGTTGCCGTTCTGC

CGATGTGCCATGTCAGGATGACC

Indel7–5

CCTACCGCGTCATTCACATGC

GACAAGATCGACAGCCGCTACG

Indel7–6

TCACTCACACACTGACTGACACG

TCTCGTCGGAGAAGAAGATGAGC

Indel7–9

CACTATGGATCTTGGTGGTCAAGG

TGCTATCTGCTACCGTCAACACG

Indel7–13

GTAGGACATGAAGGCGGCTAGG

ATCTCCTGCCACTGCACACC

Indel7–15

CGTCCATATCAAACCTCTTCTTCC

GTAACATTCCCTCCCGAACTCC

Indel7–16

GGTGCAGACTACCTAAATATGACG

GTAAACCGATGGCTTAGAGTCC

Indel7–19

AACGGGAGATCACAGGAATTTGC

GTGTTCGACTCGTCTCCATTTCG

Indel7–22

ACAGTGAAAGCCACTACCAT

CTTGACTGGGTGTCCATATT

Indel7–27

TAGGTGCAACTTCTTGAAGTG

GATCCCCTGTTCATTTGTAATT

Indel7–30

AGGGGCGCACAGCGGGGAGGGTC

TCAATCCACGGAATCCACGAC

Indel7–35

GATTTCAGAAGATGTTTGGG

GGTTTCCCAGTTTCTGTCTT

Indel7–38

TGATTTTATCCTCGTCTTCC

AACATGCGCATATGTAACTG

Indel7–40

TCTCTTCTCTCTTGCTTCTC

ATGTCAATTTGATGGGATGT

Indel7–42

TGGAAAAGAACTTCAATGCT

TTGAATCACCACAATTTAGC