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Table 2 Regulated proteins in the high infestation density experiment. N = 4

From: Proteome changes in pepper (Capsicum annuum L.) leaves induced by the green peach aphid (Myzus persicae Sulzer)

Regulated proteins Time of infestation
2 dpi 4 dpi 7 dpi
Total 97 112 105
Upregulated 69 44 25
Downregulated 28 68 80
Functional category Protein name Accession Number Protein code Fold change (log)
Photosynthesis psbP-like protein 1, chloroplastic XP_016563374.1 1 6.40 −9.36 −14.45
psbP domain-containing protein 6, chloroplastic XP_016574890.1 2 −9.73 −19.20 − 14.64
oxygen-evolving enhancer protein 3–2, chloroplastic XP_016560066.1 3 −1.25 −22.55 −22.55
photosystem II reaction center Psb28 protein XP_016541900.1 4 nc −20.08 −15.54
photosystem II CP47 chlorophyll apoprotein (chloroplast) AFP90802.1 5 1.44 2.17 1.43
photosystem II protein D1 (chloroplast) AFP90756.1 6 1.24 2.16 1.40
chloroplast pigment-binding protein CP26 ACX71300.1 7 1.05 1.26 nc
uncharacterized protein ycf39 XP_016540029.1 8 14.01 15.48 14.40
cytochrome f-like XP_016559008.1 9 1.22 1.51 1.09
NAD(P)H-quinone oxidoreductase subunit O, chloroplastic XP_016551962.1 10 −13.10 −13.10 −13.10
photosystem I P700 apoprotein A2 (chloroplast) AFP90775.1 11 1.97 3.24 2.54
photosystem I P700 apoprotein A1 (chloroplast) AFP90776.1 12 1.10 1.94 1.41
photosystem I reaction center subunit III, chloroplastic-like XP_016559311.1 13 1.08 1.49 nc
photosystem I reaction center subunit VI, chloroplastic-like XP_016562688.1 14 0.99 1.82 nc
photosystem I subunit VII (chloroplast) AFP90827.1 15 1.46 1.21 nc
ferredoxin, chloroplastic-like XP_016539055.1 16 −15.49 −20.65 −5.93
ruBisCO large subunit-binding protein subunit alpha XP_016547312.1 17 nc nc −1.22
ruBisCO large subunit-binding protein subunit beta, chloroplastic XP_016579199.1 18 nc nc −1.19
calvin cycle protein CP12–2, chloroplastic XP_016555606.1 19 −8.54 −19.50 −19.50
geranylgeranyl diphosphate reductase, chloroplastic XP_016563245.1 20 nc 1.29 nc
magnesium-chelatase subunit ChlI, chloroplastic XP_016545159.1 21 nc nc −1.55
ycf54-like protein XP_016576775.1 22 nc −15.36 −15.36
protein CURVATURE THYLAKOID 1B, chloroplastic XP_016545573.1 23 4.54 −16.26 −11.23
Amino acid metabolism glutamate--glyoxylate aminotransferase 2 XP_016547661.1 24 1.04 1.35 nc
serine--glyoxylate aminotransferase XP_016550188.1 25 1.19 1.82 1.98
glycine dehydrogenase (decarboxylating), mitochondrial-like XP_016550439.1 26 nc 1.13 nc
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase XP_016555027.1 27 1.00 1.05 nc
bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic-like isoform X1 XP_016569906.1 28 4.62 19.98 nc
putative ketol-acid reductoisomerase ACF17638.1 29 nc 1.08 nc
LL-diaminopimelate aminotransferase, chloroplastic XP_016578067.1 30 1.05 1.35 nc
kynurenine formamidase isoform X1 XP_016539519.1 31 −13.70 −18.52 −14.08
putative ferredoxin-dependent glutamate synthase 1 ACF17655.1 32 1.58 2.47 1.86
ACT domain-containing protein ACR11-like XP_016563012.1 33 nc nc −1.25
ACT domain-containing protein ACR12-like isoform X1 XP_016551208.1 34 6.14 −15.72 −15.72
Carbohydrate metabolism NADP-dependent malic enzyme-like XP_016543302.1 35 13.51 14.40 18.42
malate dehydrogenase, chloroplastic-like isoform X1 XP_016566422.1 36 nc −9.35 −18.99
enolase XP_016542903.1 37 nc nc −1.03
fructose-1,6-bisphosphatase, chloroplastic-like XP_016542325.1 38 1.09 1.71 nc
glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic XP_016581019.1 39 1.39 nc nc
glyoxylate/succinic semialdehyde reductase 2, chloroplastic XP_016562555.1 40 9.50 −9.55 −9.55
Lipid metabolism 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic XP_016538918.1 41 nc −19.01 −10.31
zerumbone synthase-like isoform X1 XP_016555539.1 42 nc nc −1.10
GDSL esterase/lipase At5g33370-like XP_016551009.1 43 19.18 14.89 8.94
BAHD acyltransferase DCR XP_016564555.1 44 14.49 nc nc
Hormone metabolism 3-ketoacyl-CoA thiolase 2, peroxisomal XP_016566389.1 45 −3.86 −18.41 −13.73
heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic XP_016542878.1 46 −4.54 −18.92 −14.44
Transcription 28 kDa ribonucleoprotein, chloroplastic XP_016566474.1 47 nc −14.55 −19.44
29 kDa ribonucleoprotein B, chloroplastic-like XP_016543071.1 48 −5.16 −19.40 −14.99
polyadenylate-binding protein 8-like isoform X1 XP_016539541.1 49 −5.45 −20.62 −10.68
DEAD-box ATP-dependent RNA helicase 3, chloroplastic XP_016537495.1 50 nc −5.66 −16.40
putative transcription factor Btf3 ABM55742.1 51 −14.41 −14.41 − 14.41
Translation 30S ribosomal protein S9, chloroplastic XP_016568673.1 52 17.49 14.04 4.42
30S ribosomal protein S17, chloroplastic XP_016562689.1 53 −14.19 −14.19 −14.19
40S ribosomal protein S2–3-like XP_016569631.1 54 14.63 16.56 15.89
50S ribosomal protein L21, chloroplastic XP_016574877.1 55 −18.84 −18.84 −14.04
60S ribosomal protein L8 XP_016581322.1 56 14.56 5.40 20.82
60S ribosomal protein L11–1-like XP_016580888.1 57 nc 2.09 1.29
60S ribosomal protein L12 XP_016577833.1 58 nc −20.87 −20.87
60S acidic ribosomal protein P2-like XP_016577917.1 59 −15.05 − 15.05 − 15.05
ribosomal protein L16 (chloroplast) AIA76997.1 60 nc −4.71 14.59
protein MLP1 homolog XP_016580206.1 61 2.19 −13.42 nc
elongation factor 1-beta 2-like XP_016548084.1 62 nc −20.60 −11.33
ribosome-recycling factor, chloroplastic isoform X1 XP_016542152.1 63 nc −20.87 −16.49
eukaryotic initiation factor 4A-2 XP_016550226.1 64 1.14 1.08 nc
chloroplast stem-loop binding protein of 41 kDa b, chloroplastic XP_016578068.1 65 1.18 1.68 0.69
Protein folding and degradation calnexin homolog 1 XP_016563032.1 66 21.15 4.55 nc
protein GrpE isoform X1 XP_016543595.1 67 19.06 nc nc
chaperone protein ClpB3, chloroplastic XP_016561338.1 68 14.52 nc nc
10 kDa chaperonin-like XP_016551490.1 69 −14.44 −14.44 −14.44
trigger factor-like protein TIG, Chloroplastic XP_016581355.1 70 nc −14.52 − 14.52
protein disulfide-isomerase-like XP_016575805.1 71 nc nc −1.29
leucine aminopeptidase 2, chloroplastic XP_016540297.1 72 1.53 1.91 nc
presequence protease 1, chloroplastic/mitochondrial-like XP_016539607.1 73 15.39 19.59 8.84
ATP-dependent zinc metalloprotease FTSH, chloroplastic XP_016568301.1 74 1.00 nc nc
proteasome subunit alpha type-4 XP_016560260.1 75 13.31 −4.25 −4.25
proteasome subunit alpha type-5 XP_016559469.1 76 6.46 5.56 −9.61
proteasome subunit alpha type-6 XP_016540329.1 77 −10.53 −20.44 −15.25
Skp1 AAX83944.1 78 14.60 −4.82 −4.82
serine protease inhibitor 5-like XP_016563917.1 79 nc 13.96 nc
Stress and defence putative 13-lipoxygenase ADZ73653.1 80 1.27 1.70 1.15
glutathione S-transferase, partial ACN60408.1 81 nc −19.12 nc
uncharacterized monothiol glutaredoxin ycf64-like XP_016560321.1 82 15.18 nc nc
thioredoxin AAR83852.1 83 nc −15.85 −16.06
peroxidase 12-like XP_016569419.1 84 13.12 nc nc
thioredoxin-like protein CDSP32, chloroplastic XP_016568326.1 85 nc nc −1.18
2-Cys peroxiredoxin BAS1, chloroplastic-like XP_016543590.1 86 nc nc −1.11
peroxiredoxin-2E-2, chloroplastic XP_016543463.1 87 nc nc −1.81
peptide methionine sulfoxide reductase A1-like XP_016564938.1 88 −14.65 −19.45 − 14.86
putative lactoylglutathione lyase isoform X1 XP_016537843.1 89 5.68 −8.60 −13.50
stromal 70 kDa heat shock-related protein, chloroplastic XP_016538990.1 90 nc nc −1.38
heat shock protein 90–5, chloroplastic XP_016547276.1 91 1.32 nc nc
hsp70-Hsp90 organizing protein 2-like XP_016568921.1 92 nc −19.97 −6.85
kirola XP_016552266.1 93 1.16 −18.60 −9.15
fatty acid hydroperoxide lyase AAK27266.1 94 8.53 15.13 19.29
CBS domain-containing protein CBSX3, mitochondrial XP_016541123.1 95 nc −13.79 −13.79
peroxisomal (S)-2-hydroxy-acid oxidase GLO1 XP_016552561.1 96 nc 1.40 nc
dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X4 XP_016573540.1 97 9.98 19.29 nc
Cell organization histone H3-like protein AAR84425.1 98 6.47 −4.92 16.80
membrane-associated protein VIPP1, chloroplastic XP_016551679.1 99 nc −20.56 −20.56
Transport coatomer subunit gamma XP_016550178.1 100 20.96 20.04 nc
signal recognition particle 43 kDa protein, chloroplastic XP_016561463.1 101 13.86 −4.29 −4.29
protein TIC110, chloroplastic XP_016539169.1 102 nc −14.53 −14.93
patellin-3-like XP_016556342.1 103 nc nc 13.46
Energy production ATP synthase CF0 subunit I (chloroplast) AFP90762.1 104 1.11 nc −1.32
ATP synthase delta chain, chloroplastic XP_016551634.1 105 nc −3.13 −4.37
ATP synthase subunit gamma, mitochondrial XP_016563339.1 106 4.71 −12.97 −12.97
V-type proton ATPase subunit B2 XP_016539985.1 107 nc nc −1.10
V-type proton ATPase subunit E XP_016566244.1 108 5.33 −14.86 −14.86
adenylate kinase 4 XP_016563818.1 109 −5.41 −19.35 −19.35
cytochrome b5-like XP_016538256.1 110 1.05 −18.07 −9.43
cytochrome b561 and DOMON domain-containing protein At3g25290-like XP_016541279.1 111 18.11 4.62 nc
Miscellaneous mitochondrial dicarboxylate/tricarboxylate transporter DTC XP_016582458.1 112 19.17 20.75 19.83
early nodulin-like protein 2 XP_016541659.1 113 15.05 nc nc
remorin XP_016564655.1 114 −13.31 −13.31 −13.31
plasma membrane-associated cation-binding protein 1 XP_016545329.1 115 −14.55 −14.55 − 14.55
uncharacterized protein LOC107845278 XP_016544993.1 116 −13.63 −13.63 − 13.63
2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like XP_016570658.1 117 15.10 16.35 15.71
ferritin-2, chloroplastic-like XP_016575544.1 118 nc −15.79 −11.72
bifunctional purple acid phosphatase 26-like XP_016556756.1 119 nc 18.86 nc
adenine phosphoribosyltransferase 1-like XP_016568861.1 120 1.64 −19.56 −15.16
haloacid dehalogenase-like hydrolase domain-containing protein At4g39970 XP_016552268.1 121 nc nc −1.02
sulfite reductase 1 XP_016554536.1 122 9.56 15.87 15.35
UPF0603 protein At1g54780, chloroplastic XP_016538515.1 123 1.23 nc nc
peptidyl-prolyl cis-trans isomerase CYP26–2, chloroplastic-like XP_016556190.1 124 −5.41 −19.23 −10.14
peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic XP_016561540.1 125 1.66 nc nc
photosynthetic NDH subunit of lumenal location 4, chloroplastic XP_016551803.1 126 15.07 nc nc
COBW domain-containing protein 1 XP_016562950.1 127 nc nc −16.25
nucleoid-associated protein At4g30620, chloroplastic-like XP_016540291.1 128 −4.84 −19.20 −19.20
thylakoid lumenal 16.5 kDa protein, chloroplastic XP_016540179.1 129 nc −20.34 −15.88
calmodulin-7-like XP_016577941.1 130 5.20 −14.88 −14.88
14–3-3 protein 6-like XP_016572083.1 131 6.58 −15.54 −15.54
plasminogen activator inhibitor 1 RNA-binding protein-like isoform X1 XP_016570399.1 132 −18.95 −18.95 − 18.95
Unknown function uncharacterized protein LOC107880062 XP_016582471.1 133 nc −1.88 −2.54
uncharacterized protein OsI_027940 XP_016556193.1 134 10.11 −9.94 −9.94
uncharacterized protein LOC107850455 XP_016550473.1 135 9.72 −8.92 −8.92
uncharacterized protein LOC107867216 XP_016568855.1 136 −4.84 −19.52 −19.52
uncharacterized protein LOC107874389 XP_016576670.1 137 −18.33 −23.49 −18.19
uncharacterized protein LOC107839055 XP_016537888.1 138 14.98 21.39 19.15
uncharacterized protein LOC107860356 XP_016561166.1 139 −14.18 −14.18 −14.18
uncharacterized protein LOC107873810 XP_016576233.1 140 −17.34 −17.34 − 17.34