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Table 3 SNPs significantly associated to stomatal conductance (Ig) values

From: Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis

Trait

Year

SNP

Chr

Pos

P value

QTL effect

R2

Multiple testing corrections

Ig T4

1

chr13_11,950,617_C_T

13

11,950,617

7.80E-06

A/D

0.39

BC/FDR

Ig T4

1

chr18_13,519,938_C_T

18

13,519,938

8.30E-06

D

0.38

BC/FDR

Ig T5

1

chr17_10,497,222_C_T

17

10,497,222

6.07E-07

D

0.25

BC/FDR

Ig T9

1

chr3_7,009,222_A_G

3

7,009,222

2.34E-07

A/D

0.50

BC/FDR

Ig T9

1

chr16_21,122,534_A_G

16

21,122,534

5.24E-06

A

0.56

BC/FDR

Ig T3

1

chr6_13,441,720_C_T

6

13,441,720

4.82E-05

A

0.22

FDR

Ig T3

1

chr11_18,012,075_T_C

11

18,012,075

3.28E-05

A

0.22

FDR

Ig T3

1

chr13_10,652,062_A_G

13

10,652,062

3.64E-04

D

0.17

FDR

Ig T3

1

chr13_4,177,522_C_T

13

4,177,522

2.29E-05

A

0.24

FDR

Ig T3

1

chr13_1,833,944_A_G

13

1,833,944

1.27E-05

A

0.18

FDR

Ig T4

1

chr7_17,388,970_A_G

7

17,388,970

9.99E-06

A/D

0.40

FDR

Ig T4

1

chr13_11,952,742_G_T

13

11,952,742

1.01E-05

A/D

0.40

FDR

Ig T4

1

chr5_2,431,422_C_T

5

2,431,422

1.24E-05

A/D

0.41

FDR

Ig T4

1

chr4_18,754,964_C_T

4

18,754,964

1.60E-05

A/D

0.37

FDR

Ig T4

1

chr3_235,211_C_T

3

235,211

1.60E-05

A/D

0.36

FDR

Ig T4

1

chr13_2,031,649_T_C

13

2,031,649

1.73E-05

A/D

0.36

FDR

Ig T9

1

chr10_1,989,600_G_T

10

1,989,600

4.71E-05

A/D

0.42

FDR

Ig T9

1

chr13_2,751,641_A_C

13

2,751,641

5.51E-05

A/D

0.40

FDR

Ig T1

2

chr14_3,096,968_G_T

14

3,096,968

9.96E-06

A

0.25

FDR

Ig T1

2

chr13_4,177,522_C_T

13

4,177,522

4.98E-05

A

0.22

FDR

Ig T9

2

chr7_17,388,970_A_G

7

17,388,970

3.78E-05

A/D

0.23

FDR

Ig T9

2

chr7_20,777,757_C_T

7

20,777,757

4.36E-05

D

0.27

FDR

Ig T9

2

chr9_553,031_C_T

9

553,031

2.04E-05

A/D

0.27

FDR

Ig T9

2

chr13_11,950,617_C_T

13

11,950,617

6.57E-05

A/D

0.23

FDR

  1. SNPs significantly associated according to the  Bonferroni Correction (BC) and False Discovery Rate (FDR). R2: the proportion of phenotypic variance explained by the marker. Positions are referred to V1 annotation of the Vitis vinifera genome (http://www.genoscope. cns.fr)