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Table 3 SNPs significantly associated to stomatal conductance (Ig) values

From: Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis

Trait Year SNP Chr Pos P value QTL effect R2 Multiple testing corrections
Ig T4 1 chr13_11,950,617_C_T 13 11,950,617 7.80E-06 A/D 0.39 BC/FDR
Ig T4 1 chr18_13,519,938_C_T 18 13,519,938 8.30E-06 D 0.38 BC/FDR
Ig T5 1 chr17_10,497,222_C_T 17 10,497,222 6.07E-07 D 0.25 BC/FDR
Ig T9 1 chr3_7,009,222_A_G 3 7,009,222 2.34E-07 A/D 0.50 BC/FDR
Ig T9 1 chr16_21,122,534_A_G 16 21,122,534 5.24E-06 A 0.56 BC/FDR
Ig T3 1 chr6_13,441,720_C_T 6 13,441,720 4.82E-05 A 0.22 FDR
Ig T3 1 chr11_18,012,075_T_C 11 18,012,075 3.28E-05 A 0.22 FDR
Ig T3 1 chr13_10,652,062_A_G 13 10,652,062 3.64E-04 D 0.17 FDR
Ig T3 1 chr13_4,177,522_C_T 13 4,177,522 2.29E-05 A 0.24 FDR
Ig T3 1 chr13_1,833,944_A_G 13 1,833,944 1.27E-05 A 0.18 FDR
Ig T4 1 chr7_17,388,970_A_G 7 17,388,970 9.99E-06 A/D 0.40 FDR
Ig T4 1 chr13_11,952,742_G_T 13 11,952,742 1.01E-05 A/D 0.40 FDR
Ig T4 1 chr5_2,431,422_C_T 5 2,431,422 1.24E-05 A/D 0.41 FDR
Ig T4 1 chr4_18,754,964_C_T 4 18,754,964 1.60E-05 A/D 0.37 FDR
Ig T4 1 chr3_235,211_C_T 3 235,211 1.60E-05 A/D 0.36 FDR
Ig T4 1 chr13_2,031,649_T_C 13 2,031,649 1.73E-05 A/D 0.36 FDR
Ig T9 1 chr10_1,989,600_G_T 10 1,989,600 4.71E-05 A/D 0.42 FDR
Ig T9 1 chr13_2,751,641_A_C 13 2,751,641 5.51E-05 A/D 0.40 FDR
Ig T1 2 chr14_3,096,968_G_T 14 3,096,968 9.96E-06 A 0.25 FDR
Ig T1 2 chr13_4,177,522_C_T 13 4,177,522 4.98E-05 A 0.22 FDR
Ig T9 2 chr7_17,388,970_A_G 7 17,388,970 3.78E-05 A/D 0.23 FDR
Ig T9 2 chr7_20,777,757_C_T 7 20,777,757 4.36E-05 D 0.27 FDR
Ig T9 2 chr9_553,031_C_T 9 553,031 2.04E-05 A/D 0.27 FDR
Ig T9 2 chr13_11,950,617_C_T 13 11,950,617 6.57E-05 A/D 0.23 FDR
  1. SNPs significantly associated according to the  Bonferroni Correction (BC) and False Discovery Rate (FDR). R2: the proportion of phenotypic variance explained by the marker. Positions are referred to V1 annotation of the Vitis vinifera genome (http://www.genoscope. cns.fr)