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Table 1 Summary of genetic diversity parameters within the core collection and its three subpopulations

From: Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis

  Sample N A A mean AE HE HO uHE F
SSR Hybrids 30 246 11.714 5.810 0.810 0.817 0.825 −0.009
Breeding Rootstocks 21 195 9.286 5.465 0.781 0.759 0.801 0.033
Roostocks/Wild 49 341 16.238 8.399 0.839 0.742 0.849 0.124
Total 100 425 20.238 10.065 0.868 0.768 0.873 0.116
SNP Hybrids 30 14,167 1.986 1.710 0.396 0.412 0.403 −0.031
Breeding Rootstocks 21 13,467 1.888 1.323 0.201 0.211 0.208 −0.011
Roostocks/Wild 49 14,197 1.990 1.337 0.219 0.189 0.222 0.167
Total 100 14,266 2.000 1.511 0.322 0.262 0.324 0.186
  1. N sample size, A number of different alleles, Amean mean number of alleles per locus, AE effective number of alleles, HE expected heterozygosity, HO observed heterozygosity, uHE unbiased expected heterozygosity, F fixation index (inbreeding coefficient)