Table 1 Frequency of di- to hexa-nucleotide repeat motifs in L. aurea
Types | Repeat Motifs | Numbers | Total |
|---|---|---|---|
Dinucleotide | AC/GT | 40 | 147 |
AG/CT | 77 | ||
AT/AT | 26 | ||
CG/CG | 4 | ||
Trinucleotide | AAC/GTT | 38 | 623 |
AAG/CTT | 116 | ||
AAT/ATT | 20 | ||
ACC/GGT | 36 | ||
ACG/CGT | 32 | ||
ACT/AGT | 35 | ||
AGC/GCT | 41 | ||
AGG/CCT | 47 | ||
ATC/GAT | 37 | ||
ATG/CAT | 26 | ||
CTG/CAG | 45 | ||
CCG/CGG | 39 | ||
TGT/ACA | 7 | ||
TCT/AGA | 33 | ||
TAT/ATA | 5 | ||
GAG/CTC | 41 | ||
GCG/CGC | 12 | ||
GTG/CAC | 13 | ||
Tetranucleotide | AAGA | 1 | 9 |
TTTA/AAAT | 3 | ||
ATCA | 1 | ||
TTAT/AATA | 2 | ||
ACAT | 1 | ||
CATA | 1 | ||
Pentanucleotide | AAGAA | 1 | 13 |
ATTTT/AAAAT | 4 | ||
AATTC | 1 | ||
AAAAG/TTTTC | 2 | ||
AAATA/TATTT | 3 | ||
AGTGC | 1 | ||
CCTCG | 1 | ||
Hexanucleotide | ns | ns | 47 |