Table 2 Expression profiles of six selected genes in the Heterodera schachtii-infected and uninfected sugar beet roots at 4 dai, as determined by qRT-PCR and mRNA-seq

qRT-PCR

mRNA-seq

qRT-PCR

mRNA-seq

qRT-PCR

mRNA-seq

qRT-PCR

mRNA-seq

BVRB_003160

Polymerase

0.57

0.06

3.11

3.14

1.15

0.91

−1.39

−0.65

BVRB_004820

Defense response

− 1.57

− 0.77

− 1.60

−1.61

−0.31

−0.77

−0.28

0.05

BVRB_3g067160

Binding to nucleic acid

−1.51

−2.21

−0.87

−1.55

0.92

0.03

4.23

3.70

BVRB_3g070680

Unknown

−1.97

−0.83

3.68

2.16

1.12

1.03

1.54

0.41

BVRB_4g093270

Unknown

1.70

0.98

−4.04

−2.67

−0.73

−0.06

4.98

1.86

BVRB_9g225900

Unknown

−0.55

0.40

8.20

3.34

0.43

0.07

−8.38

−5.23