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Table 1 Summary of the transcriptome data from sugar beet roots in the compatible and incompatible interaction with Heterodera schachtii

From: Molecular insights into the compatible and incompatible interactions between sugar beet and the beet cyst nematode

Sample

Number of trimmed reads

Number of uniquely mapped reads

Percentages of uniquely mapped reads

Uninfected susceptible roots at 4 dai (UnS-4 dai)

55,453,474

50,263,420

90.66

Infected susceptible roots at 4 dai (IS-4 dai)

54,891,104

49,904,470

90.71

Uninfected resistant roots at 4 dai (UnR-4 dai)

52,935,813

48,014,740

90.74

Infected resistant roots at 4 dai (IR-4 dai)

50,732,663

46,245,798

91.19

Uninfected susceptible roots at 10 dai (UnS-10 dai)

55,008,558

50,229,976

91.29

Infected susceptible roots at 10 dai (IS-10 dai)

49,755,520

45,227,314

90.88

Uninfected resistant roots at 10 dai (UnR-10 dai)

54,885,472

49,741,102

90.63

Infected resistant roots at 10 dai (IR-10 dai)

51,635,731

46,183,535

90.25

Total

425,298,335

385,810,355

 

Transcriptome size

246,730,718 bp

  

Average per sample coverage of the sugar beet transcriptome

 

7.33X

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