Table 2 QTLs for stripe rust resistance detected by association study using TASSEL and GAPIT
From: Genome-wide association analysis of stripe rust resistance in modern Chinese wheat
QTL | Representative SNP | Position (Mb) | Allele a | Environment | Method | P-value | R2 b(%) |
|---|---|---|---|---|---|---|---|
QYr.hbaas-1BS | IWB45438 | 9.7 | G/A | BLUP | GAPIT | 1.65E-04 | 4.7 |
| Â | Pixian 2016 | GAPIT | 1.33E-04 | 5.5 | |||
| Â | Wuhan 2017 | GAPIT | 5.09E-04 | 4.3 | |||
| Â | BLUP | TASSEL | 4.94E-04 | 5.7 | |||
| Â | Pixian 2016 | TASSEL | 3.65E-04 | 6.2 | |||
| Â | Wuhan 2017 | TASSEL | 1.17E-04 | 6.7 | |||
QYr.hbaas-1DS | IWA1787 | 8.6 | C/T | BLUP | TASSEL | 9.00E-04 | 4.9 |
| Â | Pixian 2016 | TASSEL | 3.43E-04 | 6 | |||
QYr.hbaas-2AS | IWB25308 | 13.8 | C/T | BLUP | TASSEL | 4.58E-04 | 5.5 |
| Â | Wuhan 2014 | TASSEL | 5.54E-04 | 6 | |||
| Â | Wuhan 2019 | TASSEL | 9.11E-04 | 4.8 | |||
QYr.hbaas-2BL | IWA586 | 453.3 | T/C | BLUP | GAPIT | 1.91E-04 | 4.6 |
| Â | Wuhan 2017 | GAPIT | 1.19E-04 | 5.3 | |||
| Â | BLUP | TASSEL | 1.23E-04 | 6.5 | |||
| Â | Wuhan 2017 | TASSEL | 6.44E-05 | 6.9 | |||
| Â | Xindu 2016 | TASSEL | 7.13E-04 | 5 | |||
QYr.hbaas-3AL | IWB70396 | 502.8 | A/G | BLUP | GAPIT | 1.10E-04 | 5 |
| Â | Wuhan 2014 | GAPIT | 8.97E-04 | 4.4 | |||
| Â | Wuhan 2017 | GAPIT | 1.29E-04 | 5.2 | |||
| Â | Xindu 2016 | GAPIT | 1.27E-04 | 5.4 | |||
| Â | BLUP | TASSEL | 6.60E-05 | 7.4 | |||
| Â | Wuhan 2014 | TASSEL | 9.30E-04 | 5.3 | |||
| Â | Wuhan 2017 | TASSEL | 4.39E-05 | 7.4 | |||
| Â | Xindu 2016 | TASSEL | 8.84E-05 | 7.1 | |||
QYr.hbaas-3BS | IWB12253 | 9.1 | C/T | BLUP | GAPIT | 4.40E-04 | 4.1 |
| Â | Pixian 2016 | GAPIT | 2.98E-04 | 4.9 | |||
| Â | Xindu 2016 | GAPIT | 5.50E-04 | 4.4 | |||
| Â | BLUP | TASSEL | 5.39E-04 | 5.2 | |||
| Â | Pixian 2016 | TASSEL | 4.98E-04 | 5.5 | |||
| Â | Xindu 2016 | TASSEL | 8.05E-04 | 4.9 | |||
QYr.hbaas-4BL.1 | IWB73717 | 531.3 | C/T | BLUP | GAPIT | 8.36E-04 | 3.7 |
| Â | Xindu 2016 | GAPIT | 2.79E-05 | 6.6 | |||
| Â | Xindu 2016 | TASSEL | 8.16E-05 | 6.9 | |||
QYr.hbaas-4BL.2 | IWB63337 | 558.1 | T/C | Wuhan 2017 | GAPIT | 6.44E-04 | 4.1 |
| Â | Xindu 2016 | GAPIT | 9.20E-04 | 4 | |||
| Â | Wuhan 2017 | TASSEL | 5.80E-04 | 5.1 | |||
QYr.hbaas-4BL.3 | IWB32927 | 579.4 | T/C | BLUP | GAPIT | 6.35E-04 | 3.9 |
| Â | Wuhan 2014 | GAPIT | 4.80E-04 | 4.9 | |||
| Â | Xindu 2016 | GAPIT | 2.91E-04 | 4.9 | |||
| Â | BLUP | TASSEL | 7.67E-04 | 5.2 | |||
| Â | Xindu 2016 | TASSEL | 3.88E-04 | 5.8 | |||
QYr.hbaas-4DL | IWB44356 | 477.9 | A/C | BLUP | GAPIT | 1.77E-04 | 4.7 |
| Â | Pixian 2016 | GAPIT | 1.35E-04 | 5.5 | |||
| Â | BLUP | TASSEL | 3.24E-04 | 5.9 | |||
| Â | Pixian 2016 | TASSEL | 2.87E-04 | 6.2 | |||
QYr.hbaas-6DS | IWB60233 | 6.0 | A/G | BLUP | GAPIT | 4.57E-04 | 4.1 |
| Â | Wuhan 2019 | GAPIT | 5.82E-04 | 4.2 | |||
| Â | BLUP | TASSEL | 5.97E-04 | 5.2 | |||
| Â | Wuhan 2017 | TASSEL | 9.68E-04 | 4.7 | |||
| Â | Wuhan 2019 | TASSEL | 8.57E-04 | 4.9 | |||
QY.rhbaas-7BL | IWB64121 | 704.3 | T/C | BLUP | GAPIT | 7.65E-04 | 3.8 |
| Â | Wuhan 2019 | GAPIT | 2.24E-04 | 4.8 | |||
| Â | Xindu 2016 | GAPIT | 6.17E-04 | 4.3 | |||
| Â | Wuhan 2019 | TASSEL | 4.90E-04 | 5.5 |