Skip to main content

Table 3 KaKs calculation and estimated divergence time for the duplicated CmHsf gene pairs

From: Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)

Duplicated CmHsf gene pairs Identity (%) E-value Gene alignment coverage Ka Ks Ka/Ks Divergence time (MYA)
CmHsf12-CmHsf10 95.12 1.00E-12 0.975 0.832 1.972 0.422 65.742
CmHsf26-CmHsf9 95.12 1.00E-12 0.910 0.126 0.462 0.273 15.416
CmHsf22-CmHsf27 85.09 0 0.893 0.145 0.673 0.215 22.432
CmHsf13-CmHsf28 85.09 0 0.946 0.232 0.436 0.531 14.535
CmHsf30-CmHsf16 86.13 0 0.931 0.074 0.305 0.242 10.168
CmHsf6-CmHsf19 86.13 0 0.863 0.080 0.336 0.238 11.204
CmHsf21-CmHsf1 87.83 0 0.812 0.066 0.542 0.121 18.083
CmHsf3-CmHsf31 87.83 0 0.814 0.106 0.431 0.246 14.354
CmHsf32-CmHsf35 87.97 0 0.981 0.181 0.542 0.335 18.053
  1. Note: We used the KaKs calculator to calculate the Ka/Ks. Ks, synonymous substitutions; Ka, nonsynonymous substitutions