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Table 2 Functional domain analysis of the 36 Hsf proteins identified in Cucurbita moschata

From: Genome-wide characterization and expression analysis of the heat shock transcription factor family in pumpkin (Cucurbita moschata)

Subfamily Name

Gene ID

Gene Name

Group

DBD

HR-A/B

NLS

NES

AHA

RD

Subfamily

I

CmoCh06G013840.1

CmHsf17

A

243–336

359–407

(428)QKDKHKELEEAINRKRRRHI

nd

DDGFWENLL

nd

CmoCh14G017830.1

CmHsf29

A

42–135

162–205

(225)GFRKVDPDKWEFAHESFLRGQRHLLKLIRR

IEELCLSL

SDFWQKLIEL

nd

CmoCh17G011810.1

CmHsf34

A

43–136

163–206

(243)ITRKRRRPIQ

TELEALALEMQGL

EGFWEELFSE

nd

CmoCh19G000190.1

CmHsf36

A

79–172

198–242

(278)ATKKRRWPID

LEALAMEM

EGFWEEFFSE

nd

CmoCh05G014000.1

CmHsf12

C

458–551

573–599

(1191)QRRPPVGPEDPKRSASGRHTGYVKNYD

nd

nd

nd

CmoCh12G005810.1

CmHsf26

C

39–132

153–205

(236)RKRRLTASPSLENLQDETILAAVKQEQLE

nd

nd

nd

CmoCh05G000960.1

CmHsf9

C

41–134

155–208

(236)EIGRKRRLTSS

nd

nd

nd

CmoCh04G011130.1

CmHsf8

C

12–105

137–184

(323)IDHEKRSVDNEDDELDMETIDTRTHEEKSQD

nd

nd

nd

CmoCh04G000850.1

CmHsf7

C

12–105

137–184

(369)RLDESYIEKSNTVNLMELMASDQEILYETPAKMQG

nd

nd

nd

CmoCh05G013450.1

CmHsf11

A

53–146

162–195

(221)RRVRRRVTMRPPPSPVKFVKA

VKREDDGELALEISKLKQEQI

SNFWDDLLVQ

nd

CmoCh13G006110.1

CmHsf24

A

11–104

124–172

(187)RFLHKPGLRLDLLPQLETSDRKRRLP

LKRDKEQLLLELRKHEQ

DVFWQQFLTE

nd

CmoCh10G006520.1

CmHsf22

A

9–102

122–155

(189)PDKKRRFMTS

nd

EGFWEELFSE

nd

CmoCh16G012250.1

CmHsf33

A

32–125

154–205

(236)EANKKRRLKQD

MKVLLDEKLCLDNH

SNFWDDLLVQ

nd

CmoCh06G006450.1

CmHsf14

A

32–125

154–205

(236)EANKKRRLKQD

LQDFELLIKQM

SNFWNDLLVH

nd

CmoCh06G004420.1

CmHsf13

A

968–1124

1144–1195

(1225)PRMKRKFVKQ

LQLALALRL

LSPFWDLGSL

nd

CmoCh14G002670.1

CmHsf28

A

239–387

407–438

(474)FLLKRKKEPKDIDSERIKRKFVK

nd

DVFWEQFLTE

nd

CmoCh02G000520.1

CmHsf2

A

11–104

117–155

(173)RMGNQQKQLIAIMAAELQKDQSRKRRK

LSELERQELELKI

DVFWEQFLTE

nd

CmoCh11G006110.1

CmHsf27

A

11–104

117–155

nd

LEEELEGM

DVFWEQFLTE

nd

CmoCh07G001570.1

CmHsf18

A

11–104

123–179

(205)HERKRRLATV

LQLQMQL

DVFWEQFLTE

nd

CmoCh14G019680.1

CmHsf30

A

9–102

119–174

(201)FNKKRRLPS

LQLQELTM

DVFWEQFLTE

nd

CmoCh06G012330.1

CmHsf16

A

14–107

124–179

(206)FNKKRRLPS

IQLQDLTV

DVFWEQFLTE

nd

Subfamily

II

CmoCh03G012560.1

CmHsf6

C

276–391

320–352

(432)RRQKLELQAQIAQFKALHIRLLDCVGRRIEK

nd

nd

nd

CmoCh07G002420.1

CmHsf19

C

8–120

147–178

(182)KTRNPAPFLSKTY

nd

nd

nd

Subfamily

III

CmoCh09G002330.1

CmHsf21

B

21–114

117–155

(287)IHSKKRLHPEYASNNIGKENNNKARFV

LEKDDLGLNL

nd

KLFGVAI

CmoCh01G018910.1

CmHsf1

B

120–213/21–114

117–156

(374)GSSKSFVTIVEEPKTKLFGVSLQSKKRVHPE

VLEKDDLGLNL

nd

KLFGVSL

CmoCh05G001750.1

CmHsf10

B

21–114

117–157

(337)KKRQHPDTTNYVSTSSNVSDTNKNSRGS

LLLLFKPRL

nd

KLFGVPL

CmoCh10G009220.1

CmHsf23

B

21–114

117–158

(273)RGKKRMHHE

KQLLLAI

nd

KLFGVPI

CmoCh11G009050.1

CmHsf25

B

11–104

124–172

(221)RGKKRGASDEE

nd

nd

KLFGVPI

CmoCh03G000560.1

CmHsf4

B

32–125

150–187

(197)GSRKEDEDERPKLFGVRLEVEGERRRKTKR

nd

nd

KLFGVRL

CmoCh06G009230.1

CmHsf15

B

19–112

144–180

(196)EMMVMKPNLKLFGVKLEVGEEDEMVRQSKR

LKLFGVKLEV

nd

KLFGVKL

CmCh07G007220.1

CmHsf20

B

6–99

144–183

(244)EKNNDKNKTKREEEEKVEVCGNEPEAKVMKT

nd

nd

KLFGVWL

CmoCh03G009950.1

CmHsf5

B

6–99

150–188

(258)EKKKMKRVREEKIGCSNAPHAKAMK

nd

nd

KLFGVWL

CmoCh02G015130.1

CmHsf3

B

21–114

177–207

(254)FLTKTYQLVDDPDVDDLISWNEDGSTFIVW

nd

nd

KLFGVSI

CmoCh15G012680.1

CmHsf31

B

21–114

176–206

(279)IGVKRRREEE

nd

nd

KLFGVSI

CmoCh16G001410.1

CmHsf32

B

19–112

134–173

nd

LASAKSLDL

nd

KLFGVWL

CmoCh18G012590.1

CmHsf35

B

85–178

226–260

(269)ENQLKSSCKVRESVLASAKSLDLFPLKRRSEE

LASAKSLDL

nd

KLFGVS

  1. Note: The amino acid sequences of Hsf in the table came from Cucurbit genomics database. DBD DNA-binding domain, HR-A/B Oligomerization domain, NLS Nuclear localization signal, NES Nuclear export signal, AHA Transcriptional activation domain, RD Repressor domain; nd No motifs detectable by sequence similarity search. For the NLS column, the numbers in parenthesis are the start site of the functional domain