Skip to main content

Table 3 Genetic variation of the 11 populations in Paeonia decomposita

From: Genetic diversity and population structure of the endangered species Paeonia decomposita endemic to China and implications for its conservation

Pop Na Ne I Ho He F PIC Ar PPL Fis HWE
DB1 4.313 2.714 1.017 0.456 0.538 0.154 0.456 3.731 93.75% 0.178 56A*, 73A***, 91A***, PAG1*, PSESP5***, PS004**
DB2 4.813 2.813 0.989 0.464 0.486 0.053 0.464 3.892 87.50% 0.066 56A**, 73A***, 91A*, AG8073*, P05***, PAG1***, Pae100*
JC1 3.875 2.616 0.826 0.437 0.407 −0.045 0.437 3.666 75.00% −0.032 56A*, 73A**, 91A***, PS026**
JC2 3.500 2.002 0.711 0.358 0.374 0.101 0.358 2.959 81.25% 0.063 56A**, 73A***, 91A*, AG8073**, Pae100**
JC3 4.250 2.779 0.934 0.408 0.454 0.055 0.408 3.802 87.50% 0.127 56A***, 73A***, 91A***, P05**, Pae100***
JC4 3.438 1.924 0.733 0.425 0.399 −0.022 0.425 2.953 87.50% −0.040 56A***, 73A***, P10*, Pae100***
JC5 3.063 2.132 0.707 0.438 0.388 −0.160 0.438 2.779 68.75% −0.098 56A*, 73A***, PAG1*
M1 3.063 1.811 0.580 0.320 0.329 0.000 0.320 2.365 81.25% 0.041 56A***, 73A***, 91A**, PAG1***, PS004***
M2 3.625 2.307 0.689 0.314 0.352 0.065 0.314 2.869 75.00% 0.120 56A***, 73A***, 91A*, PAG1***, PS004***, PS026*
M3 3.500 2.584 0.767 0.385 0.398 0.079 0.385 3.087 75.00% 0.055 56A***, 73A***, P03**, P05*, P10*, Pae100***, PS004**, PS026*
M4 2.563 1.859 0.593 0.325 0.335 0.071 0.325 2.563 75.00% 0.083 56A*, 73A**, Pae100**
mean 3.637 2.322 0.777 0.394 0.405 0.032 0.394 3.151 80.68% 0.051  
  1. Na: The observed number of allele, Ne: The effective number of alleles, I: Shannon’s information index, Ho: Observed heterozygosity, He: Expected heterozygosity, F: Fixation index, PIC: Polymorphism information content
  2. Ar: Allelic richness, PPL: the percentage of polymorphic loci, Fis: Inbreeding coefficient among individuals within populations, HWE: loci showing a significant departure from Hardy-Weinberg equilibrium with a global test at 5% level and after a sequential Bonferroni correction
  3. (*P < 0.05. ** P < 0.01. *** P < 0.001. indicates loci with heterozygote deficit)