Table 3 Major putative QTL (R2 > 10.0%) and candidate genes identified in confidence intervals of QTL associated with soybean seed protein concentration in the two RIL populations (‘AC X790P x S18-R6’ and ‘AC X790P x S23-T5’)
From: Genomic regions associated with important seed quality traits in food-grade soybeans
| QTL Namea | Chr. | Flanking Markers | Candidate ID | Annotation | Type | Description | Position |
|---|---|---|---|---|---|---|---|
| qPro_Gm02–3 | 2 | S02_40793724 - S02_41072417 | Glyma.02 g220000 | GO:0006412 | GO-bp | 60S Ribosomal protein L16p/L10e | 40,794,106..40795066 |
| Glyma.02 g221500 | GO:0006412 | GO-bp | 30S Ribosomal protein S2 | 40,921,208..40921756 | |||
| qPro_Gm04–4 | 4 | S04_48435528 - S04_49024162 | Glyma.04 g212500 | AT5G61750 | AT | Cupin | 48,435,108..48435965 |
| Glyma.04 g214500 | GO:0006412 | GO-bp | Ribosomal protein L17 family protein | ||||
| qPro_Gm06–1 | 6 | S06_19074 - S06_699413 | Glyma.06 g004500 | GO:0015171 | GO-mf | Transmembrane amino acid transporter protein | 393,722..398436 |
| Glyma.06 g001800 | GO:0006412 | GO-bp | Ribosomal protein L3 family protein/Translation protein | 171,462..172334 | |||
| qPro_Gm06–3 | 6 | S06_9128442 - S06_11029737 | Glyma.06 g113700 | GO:0006412 | GO-bp | 40S ribosomal protein S3a-like | 9,225,152..9227191 |
| Glyma.06 g116400 | PF01490 | PFAM | Transmembrane amino acid transporter protein | 9,472,699..9476835 | |||
| Glyma.06 g119700 | GO:0006886 | GO-bp | Intracellular protein transport | 9,737,256..9743653 | |||
| qPro_Gm06–6 | 6 | S06_30639643 - S06_33589987 | Glyma.06 g225600 | GO:0006413 | GO-bp | Translation initiation | 31,131,372..31133932 |
| Glyma.06 g225700 | GO:0006412 | GO-bp | Translation initiation factor eIF-4F | 31,209,402..31216702 | |||
| qPro_Gm13–4 | 13 | S13_28227783 - S13_28254683 | Glyma.13 g167800 | GO:0042254 | GO-bp | Ribosome biogenesis | 28,237,788..28239022 |
| Glyma.13 g167900 | GO:0042254 | GO-bp | Ribosome biogenesis regulatory protein | 28,240,381..28243803 | |||
| qPro_Gm15–3 | 15 | S15_10218629 - S15_10877491 | Glyma.15 g129800 | GO:0006412 | GO-bp | Ribosomal protein S27a/Ubiquitin family | 10,430,457..10431571 |
| Glyma.15 g130000 | GO:0006412 | GO-bp | Structural constituent of ribosome | 10,439,067..10440332 | |||
| Glyma.15 g134800 | GO:0006412 | GO-bp | Ribosomal protein L7/L12 C-terminal domain | 10,831,146..10833232 |
