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Table 2 Significant KRN-associated QTNs codetected in at least two environments and by at least three models

From: Genome-wide association studies and whole-genome prediction reveal the genetic architecture of KRN in maize

SNP

Chr

Pos

Single-locus GWAS (MLM)

Multilocus GWAS

LOD

PVE (%)

LOD

PVE (%)

Methods1

PZE-101124566

1

156,580,056

3.44

3.00

4.60–11.63

1.91–3.02

2, 3, 4, 5, 6, 7

PZE-101144585

1

187,526,525

3.13

2.00

4.39–5.95

1.84–3.51

3, 4, 5, 7

PZE-102176259

2

219,023,013

3.32

3.00

3.41–4.17

1.06–2.04

2, 3, 4, 7

PUT-163a-110,967,306-138

3

191,981,941

3.28

2.56

8.17–11.77

1.62–3.37

2, 5, 6

PZE-105114980

5

171,187,130

/

/

4.35–8.20

1.15–2.29

2, 3, 5,6,7

PZE-109047930

9

79,941,271

4.61

4.00

5.73–10.40

2.43–5.21

2, 3, 5, 6, 7

PZE-110106563

10

146,944,098

3.61

3.00

3.65–5.25

1.18–2.38

2, 3, 4, 5, 6, 7

  1. Methods1: Numbers 1 to 7 represent different GWAS methods: 1: MLM; 2: mrMLM; 3: FASTmrMLM; 4: FASTmrEMMA; 5: pLARmEB; 6: pKWmEB; 7: ISIS EM-BLASSO