Fig. 2

Genome-wide distribution of significant QTNs detected by different models under four conditions. a XinXiang (XX), Henan Province by the MLM method; b Beijing (BJ) by the MLM method; c Gongzhuling (GZL), Jilin Province, by the MLM method; d BLUP across the three environments by the MLM method; e The genome-wide distribution of all the significant QTNs identified by seven methods: the four circles from outside to inside show the distribution of significant QTNs identified in XX, BJ, and GZL and with BLUP, respectively. Dots of different colors represent QTNs mined by different GWAS models: red dots, MLM; green dots, mrMLM; blue dots, FASTmrMLM; black dots, FASTmrEMMA; pink dots, pLARmEB; purple dots, pKWmEB; pale goldenrod dots, ISIS EM-BLASSO