SNP | Candidate genes in LD interval (number of DEGs) | Wax-related DEGs* | Log2FCa | Arabidopsis orthologs** | Gene description |
---|---|---|---|---|---|
Bn-A01-p6380934 | BnaA01g11230D-BnaA01g12160D (6) | BnaA01g11780D BnaA01g11880D BnaA01g12090D BnaA01g12130D | 3.95 3.64 2.09 −5.46 | AT1G14800 AT4G22070 AT4G22270 AT4G22320 | Nucleic acid-binding WRKY31 MEMBRANE RELATED BIGGER1 Golgin family A protein |
Bn-A01-p2504370 | BnaA01g03740D-BnaA01g36700D (92) | BnaA01g03840D | N | AT4G33030** | UDP-Sulfoquinovose Synthase (SQD1) |
Bn-A05-p1299570 | BnaA05g02080D-BnaA05g36070D (57) | BnaA05g02270D | 6.12 | AT2G41540** | NAD-dependent Glycerol-3-Phosphate Dehydrogenase (GPDHc1) |
Bn-A05-p2030789 | BnaA05g03470D-BnaA05g36470D (47) | BnaA05g03540D BnaA05g03570D BnaA05g03920D BnaA05g04000D | −2.47 − 2.19 − 2.59 −3.42 | AT2G43770 AT2G43800 AT2G44220 AT2G44450 | WD40 repeat-like superfamily protein FORMIN HOMOLOGY 2 DUF239 BGLU15 |
Bn-scaff_15798_1-p733219 | BnaC04g35190D-BnaC04g36140D (3) | BnaC04g35220D BnaC04g35860D | 7.51 −4.97 | AT1G13080 AT2G23200 | CYP71B2 Protein kinase superfamily protein |
Bn-A08-p16793918 | BnaA08g17640D-BnaA08g18370D (3) | BnaA08g17780D BnaA08g17990D BnaA08g18220D | −2.83 2.04 −6.32 | AT1G29720 AT1G29330 AT1G28670 | Leucine-rich repeat transmembrane protein kinase ER RETENTION DEFECTIVE 2 (ERD2) ARAB-1/lipase |
Bn-A08-p19244116 | BnaA08g22500D- BnaA08g23820D (6) | BnaA08g22650D | −2.35 | AT1G18360** | Monoacylglycerol Lipase (MAGL) |
Bn-A02-p25285941 | BnaA02g32000D-BnaA02g32920D (1) | BnaA02g32450D | 2.07 | AT5G24570 | uncharacterized protein |
Bn-A05-p19622826 | BnaA05g23200D-BnaA05g24000D (2) | BnaA05g23670D BnaA05g23790D | −2.10 −2.60 | AT3G15870** AT3G25110** | Acyl-CoA desaturase-like, FAD5-like Desaturase Acyl-ACP thioesterase A (FatA) |
Bn-scaff_16361_1-p1569363 | BnaC08g27100D-BnaC08g29310D (5) | BnaC08g27970D BnaC08g28370D BnaC08g28510D | −2.09 −6.31 6.77 | AT3G57040 AT3G57430 AT1G43760 | response regulator 9 (ARR9) ORGANELLE TRANSCRIPT PROCESSING 84 Unknown |
Bn-scaff_18636_1-p11498 | BnaA01g13360D-BnaA01g14340D (9) | BnaA01g13470D | −2.11 | AT4G23850** | Long-chain acyl-CoA synthetase (LACS4) |
Bn-A02-p5516551 | BnaA02g05260D-BnaA02g06170D (4) | BnaA02g05700D* | 4.14 | AT5G22500** | Alcohol-forming fatty acyl reductase (AlcFAR1) |
Bn-A02-p7004091 | BnaA02g06800D-BnaA02g34890D (42) | BnaA02g15790D BnaA02g07110D BnaA02g07120D BnaA02g27940D | 3.02 3.44 3.60 −7.00 | AT1G72110** AT5G59310** AT5G59310** AT5G54680 | Bifunctional wax ester synthase/DAGAT Lipid transfer protein type 1 (LTP4) Lipid transfer protein type 1 (LTP4) bHLH105 |
Bn-A05-p4055839 | BnaA05g06770D-BnaA05g07650D (3) | BnaA05g06830D* BnaA05g07340D | 5.35 −3.75 | AT2G37700** AT2G37090 | CER1-like 2 IRX9 |
Bn-scaff_20270_1-p1172081 | BnaA05g30910D-BnaA05g31670D (1) | BnaA05g31340D | −3.86 | AT3G05970** | Long-chain acyl-CoA synthetase (LACS6) |
Bn-A05-p23445454 | BnaA05g31560D-BnaA05g32450D (10) | BnaA05g32280D BnaA05g32300D BnaA05g32390D BnaA05g32430D BnaA05g32400D BnaA05g32440D | N N N N −8.36 −9.72 | AT3G02990 AT3G03050 AT3G03150 AT3G03200 AT3G03160 AT3G03210 | HSFA1E CSLD3 Unknown NAC045 Unknown AXY9 |
Bn-A07-p6765464 | BnaA07g08250D-BnaA07g08960D (7) | BnaA07g08340D BnaA07g08720D | 5.12 4.39 | AT3G25110** AT1G27950** | Acyl-ACP thioesterase A (FatA) Lipid transfer protein type 5 (LTPG1) |
Bn-A08-p14906652 | BnaA08g13890D-BnaA08g16770D (19) | BnaA08g16470D | I | AT1G47620** | Midchain Alkane Hydroxylase (CYP96A8) |
Bn-A09-p30763709 | BnaA09g40180D-BnaA09g41120D (4) | BnaA09g40250D BnaA09g40500D | N −4.15 | AT5G58470 AT2G26420** | TAF15b Phosphatidylinositol-Phosphate Kinase type IB |
Bn-A09-p32945202 | BnaA09g44310D- BnaA09g45200D (1) | BnaA09g44740D | 4.66 | AT1G76690** | Oxo-Phytodienoic Acid Reductase |
Bn-A10-p4786596 | BnaA10g00010D-BnaA10g28040D (50) | BnaA10g00380D* | −2.18 | AT1G01600** | Fatty acyl ω-hydroxylase (CYP86A4) |
BnaA10g00700D* BnaA10g02480D* BnaA10g09300D BnaA10g25660D* | −2.10 − 2.71 N 4.05 | AT1G01120** AT1G04220** AT1G08510** AT5G04530** | Ketoacyl-CoA Synthase (KCS1) Ketoacyl-CoA Synthase (KCS2/DAISY) fatty acyl-ACP thioesterases B (FatB) Ketoacyl-CoA Synthase (KCS19) | ||
Bn-A10-p15096523 | BnaA10g21560D-BnaA10g24090D (18) | BnaA10g21580D | N | AT1G50410 | CHR28 |
Bn-A03-p12990610 | BnaA03g24640D- BnaA03g25500D (12) | BnaA03g24870D BnaA03g24880D | −4.51 −4.95 | AT4G11850** AT4G11850** | Phospholipase D &gamma Phospholipase D &gamma |
Bn-A03-p18766028 | BnaA03g35890D- BnaA03g36690D (2) | BnaA03g36540D | I | AT4G11850** | Phospholipase D &gamma |
Bn-A06-p600029 | BnaA06g00610D- BnaA06g38780D (57) | BnaA06g00960D BnaA06g08550D BnaA06g08690D | −3.87 4.54 −2.51 | AT1G53390** AT1G13560** AT1G13640** | ABC Transporter (WBC25/ABCG24) Diacylglycerol Cholinephosphotransferase (AAPT1) Phosphatidylinositol-4-Kinase &gamma |
Bn-A08-p4273091 | BnaA08g04100D- BnaA08g04440D (3) | BnaA08g04230D | −3.42 | AT1G45201** | Triacylglycerol lipase (TAGL) |
Bn-A07-p1657613 | BnaA07g01820D- BnaA07g39090D (31) | BnaA07g38540D BnaA07g36830D* | −3.31 −2.25 | AT3G45140** AT1G24470** | lipoxygenase 2 (LOX2) Ketoacyl-CoA Reductase (KCR2) |
Bn-A04-p14642152 | BnaA04g18420D- BnaA04g20360D (3) | BnaA04g19180D BnaA04g19410D* BnaA04g20360D | −2.76 2.61 4.29 | AT2G33150** AT2G33380** AT2G34770** | peroxisomal 3-ketoacyl-CoA thiolase (KAT2/FED1) Caleosin (RD20) Fatty Acid 2-hydroxylase (FAH1) |
Bn-scaff_17369_1-p884077 | BnaC01g15540D- BnaC01g18260D (7) | BnaC01g17900D | −2.23 | AT4G25970** | phosphatidylserine decarboxylase 3 (PSD3) |
Bn-scaff_15918_1-p77704 | BnaC02g38670D-BnaC02g39660D (22) | BnaC02g39310D BnaC02g39360D BnaC02g39080D BnaC02g38980D | N N N N | AT5G28770 AT5G28650 AT5G49460** AT5G49300 | bZIP63 WRKY74 ATP citrate lyase B subunit (ACLB-2) GATA16 |
Bn-scaff_22728_1-p703468 | BnaC03g11180D-BnaC03g78270D (16) | BnaC03g12050D BnaC03g72910D BnaC03g73050D | 3.37 −5.35 −2.56 | AT5G59320** AT4G11850** AT4G11840** | Lipid transfer protein type 1 (LTP3) Phospholipase D &gamma Phospholipase D &gamma |
Bn-scaff_16888_1-p1834154 | BnaC04g00010D-BnaC04g56960D (14) | BnaC04g11110D* BnaC04g24820D BnaC04g29960D BnaC04g42410D BnaC04g45800D | 2.15 N 2.57 −4.59 −3.32 | AT2G33380** AT3G56850 AT1G65290** AT2G31380 AT2G38540** | Caleosin (RD20) AREB3 Acyl carrier protein (ACP) salt tolerance homologue Lipid transfer protein type 1 (LTP1) |
Bn-scaff_16485_1-p747170 | BnaC06g02420D-BnaC06g43990D (4) | BnaC06g14560D BnaC06g28860D BnaC06g43050D BnaC06g43550D | 2.21 −2.84 2.21 − 2.20 | AT3G53310 AT1G67750 AT1G80080 AT3G25110** | AP2/B3-like TF Pectate lyase ATRLP17 Acyl-ACP thioesterase A (FatA) |
Bn-scaff_17526_1-p1726345 | BnaC09g00720D-BnaC09g02480D (39) BnaC09g51260D-BnaC09g52120D (2) | BnaC09g01250D BnaC09g01480D BnaC09g01910D BnaC09g01970D BnaC09g51620D* | N N −3.88 −6.39 N | AT3G26935 AT3G27520 AT3G28857 AT3G28920 AT1G57750** | DHHC-type zinc finger family protein Unknown bHLH DNA-binding family protein ZINC FINGER HOMEODOMAIN 9 Midchain alkane hydroxylase (CYP96A15/MAH1) |
Bn-scaff_17487_1-p812141 | BnaC09g09990D-BnaC09g11020D (19) | BnaC09g10340D BnaC09g10500D BnaC09g10800D | −3.46 −5.41 N | AT2G20300 AT2G20900** AT1G62640** | ALE2 diacylglycerol kinase Ketoacyl-ACP Synthase III (KAS III) |
Bn-scaff_20836_1-p125625 | BnaC09g15380D-BnaC09g16870D (1) | BnaC09g16050D* | −2.09 | AT1G02205** | CER1 |