DEG | Cluster | P. vulgaris ID | Arabidopsis ortholog gene | Gene symbol | Function |
---|---|---|---|---|---|
Up-regulated | Cell wall dynamics | Phvul.009G242700 | AT5G44030 | CESA4 | Cellulose synthase A4; required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation |
Phvul.009G090100 | AT4G18780 | IRX1 | IRREGULAR XYLEM 1; required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation | ||
Phvul.003G154600 | AT5G17420 | IRX3 | IRREGULAR XYLEM 3; required for beta-1,4-glucan microfibril crystallization, a major mechanism of the cell wall formation | ||
Phvul.008G029000 | AT5G15630 | IRX6 | IRREGULAR XYLEM 6, a COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family involved in secondary cell wall biosynthesis | ||
Phvul.006G065800 | AT2G38080 | IRX12 | Laccase-4; required for secondary xylem cell wall lignification | ||
Phvul.009G148800 | AT3G18660 | PGSIP1 | Plant glycogenin-like starch initiation protein 1; glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls | ||
Phvul.001G021800 | AT4G33330 | PGSIP3 | Plant glycogenin-like starch initiation protein 3; glycosyltransferase required for the addition of both glucuronic acid and 4-O-methylglucuronic acid branches to xylan in stem cell walls | ||
Phvul.005G091200 | AT5G54690 | GAUT12 | Galacturonosyltransferase 12; involved in pectin assembly and/or distribution, and in the synthesis of secondary wall glucuronoxylan | ||
Phvul.007G026900 | AT1G68560 | XYL1 | Alpha-xylosidase 1; glycoside hydrolase releasing xylosyl residues from xyloglucan oligosaccharides at the non-reducing end | ||
Phvul.006G133700 | AT5G49720 | GH9A1 | Endoglucanase 25; required for cellulose microfibrils formation. Involved in cell wall assembly during cell elongation and cell plate maturation in cytokinesis | ||
Phvul.009G016100 | AT1G75680 | GH9B7 | Endoglucanase 10, glycosyl hydrolase 9B7. Endohydrolysis of (1- > 4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans | ||
Phvul.007G218400 | AT4G02290 | GH9B13 | Endoglucanase 17, glycosyl hydrolase 9B13. Endohydrolysis of (1- > 4)-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans | ||
Phvul.010G123100 | AT3G14310 | PME3 | Pectinesterase 3; acts in the modification of cell walls via demethylesterification of cell wall pectin | ||
Phvul.008G288800 | AT4G12730 | FLA2 | Fasciclin-like arabinogalactan 2; may be a cell surface adhesion protein | ||
Phvul.005G011900 | AT3G10720 | AT3G10720 | Pectinesterase 25; acts in the modification of cell walls via demethylesterification of cell wall pectin | ||
Phvul.009G252200 | AT3G16850 | AT3G16850 | Pectin lyase-like superfamily protein | ||
Phvul.006G028800 | AT4G23820 | AT4G23820 | Pectin lyase-like superfamily protein | ||
Cell cycle, signaling and cytoskeleton organization | Phvul.001G211000 | AT1G02730 | CSLD5 | Cellulose synthase like D5; 1,4-beta-D-xylan synthase involved in stem and root growth | |
Phvul.009G017300 | AT1G75780 | TUB1 | Tubulin beta; tubulin is the major constituent of microtubules | ||
Phvul.009G114100 | AT1G50010 | TUA2 | Tubulin alpha-2 chain; tubulin is the major constituent of microtubules | ||
Phvul.007G047300 | AT1G04820 | TUA4 | Tubulin alpha-4 chain. Encodes an alpha tubulin isoform, an structural constituent of cytoskeleton | ||
Phvul.008G203300 | AT2G26760 | CYCB1;4 | Cyclin B1;4, a G2/mitotic-specific cyclin-B involved in centrosome formation and ciliogenesis | ||
Phvul.001G000500 | AT1G20930 | CDKB2;2 | Cyclin-dependent kinase B2–2, regulation of G2/M transition of mitotic cell cycle | ||
Phvul.003G293500 | AT3G19050 | POK2 | Phragmoplast orienting kinesin 2; involved in the spatial control of cytokinesis by a proper phragmoplast guidance | ||
Phvul.007G159100 | AT2G37420 | AT2G37420 | ATP binding microtubule motor family protein; responsible for microtubule translocation | ||
Phvul.006G052700 | AT3G20150 | AT3G20150 | Kinesin motor family protein, ATP-dependent microtubule motor activity | ||
Phvul.002G093500 | AT1G70950 | TPX2 | Targeting protein for Xklp2; microtubule-associated protein (MAP) that regulates the orientation of interphase cortical microtubules | ||
Phvul.001G028200 | AT1G10200 | WLIM1 | LIM domain-containing protein WLIM1; binds to actin filaments and promotes cross-linking into thick bundles | ||
Phvul.009G082500 | AT2G26330 | TE1 | ERECTA; receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence and stomatal patterning | ||
Phvul.007G063200 | AT5G62230 | ERL1 | ERECTA-like 1; receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2 | ||
Phvul.002G196200 | AT5G46330 | MPL12.8 | FLAGELLIN-SENSITIVE 2; constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22) | ||
Phvul.008G017400 | AT3G28040 | AT3G28040 | Leucine-rich receptor-like protein kinase family protein, probably inactive | ||
Phvul.005G099100 | AT5G45970 | RAC2 | RAC-like 2; inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors | ||
Phvul.006G115500 | AT1G01200 | RABA3 | Rab family protein; intracellular vesicle trafficking and protein transport | ||
Down-regulated | Protein folding | Phvul.004G107700 | AT5G52640 | HSP90.1 | Heat shock protein 81–1; functions as a holding molecular chaperone which stabilizes unfolding protein intermediates |
Phvul.004G162100 | AT3G24500 | MBF1C | Multiprotein bridging factor 1C; involved in the tolerance to heat and osmotic stress | ||
Phvul.004G044100 | AT1G74310 | HSP101 | Heat shock protein 101; molecular chaperone that plays an important role in thermotolerance | ||
Phvul.009G078300 | AT2G26150 | HSFA2 | Heat shock transcription factor A2; transcriptional activator involved in heat stress responses | ||
Phvul.011G065000 | AT3G12580 | HSP70 | Heat shock protein 70; a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | ||
Phvul.003G154800 | AT1G16030 | Hsp70b | Heat shock protein 70B; in cooperation with other chaperones, stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides | ||
Phvul.008G013000 | AT5G02500 | HSC70–1 | Heat shock 70 kDa protein 1/8; a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | ||
Phvul.008G095600 | AT3G08970 | ATERDJ3A | DnaJ domain-containing protein; regulates protein folding in the endoplasmic reticulum (ER) lumen | ||
Phvul.010G024500 | AT3G25230 | ROF1 | Rotamase FKBP 1; co-chaperone that positively modulates thermotolerance by interacting with HSP90 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family | ||
Phvul.009G046500 | AT4G27670 | HSP21 | Heat shock protein 21; protein processing in endoplasmic reticulum | ||
Phvul.011G016100 | AT4G25200 | HSP23.6 | Small heat shock protein 23.6; protein processing in endoplasmic reticulum | ||
Phvul.010G024500 | AT3G25230 | ROF1 | Rotamase FKBP 1; co-chaperone that positively modulates thermotolerance by interacting with HSP90 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family | ||
Phvul.010G155300 | AT1G52560 | AT1G52560 | HSP20-like chaperone; protein processing in endoplasmic reticulum | ||
Phvul.002G095400 | AT1G23100 | AT1G23100 | GroES-like protein; chaperone cofactor-dependent protein refolding | ||
Chloroplast-associated processes | Phvul.009G259600 | AT2G46830 | CCA1 | Protein CCA1; transcription factor involved in the circadian clock and in the phytochrome regulation | |
Phvul.008G022800 | AT3G02380 | COL2 | CONSTANS-like 2; putative transcription factor involved in chloroplast organization | ||
Phvul.001G061400 | AT5G24120 | SIGE | Sigma factor E; essential for blue light-mediated transcription of psbD, which encodes the photosystem II reaction center protein D2 | ||
Phvul.010G018200 | AT3G17609 | HYH | HY5-homolog; transcription factor that promotes photomorphogenesis in light | ||
Phvul.007G226300 | AT5G03555 | NCS1 | Nucleobase cation symporter 1; nucleobase-proton symporter that facilitates uracil import into plastids | ||
Phvul.008G254400 | AT3G21150 | BBX32 | B-box 32 protein; repressor of light-mediated regulation of seedling development | ||
Phvul.006G040800 | AT4G27030 | FADA | Fatty acid desaturase A; fatty acid desaturase involved in the production of chloroplast-specific phosphatidylglycerol molecular species | ||
Phvul.005G113200 | AT3G21890 | BBX31 | B-box domain protein 31; involved in the CO-mediated long-day flowering-promotion pathway |