miR168 targets Argonaute1A mediated miRNAs regulation pathways in response to potassium deficiency stress in tomato

Table 1 Relative miRNA expression of 10 DE miRNAs for comparison of the35S:SlmiR168a versus WT groups and 35S:rSlAGO1 versus WT groups, in respect to by integrated analysis of mRNA-seq and miRNA-seq and Quantitative real-time PCR. * Asterisk indicates statistical significance of differential gene expression with p-value < 0.05 determined using a Duncan’s test compared with the WT. Inf, Infinite; FC, Fold Change; Sig FC, Significant Fold Change

miR_name	Compared group	FC	Sig FC	Regulation	RT-PCR	mRNA	FC	Sig FC	Regulation	RT-PCR
stu-miR530_L-2R + 2	35S:rSlAGO1/ JZ18	2.19	yes	up	1.96*	Solyc04g008110.3.1	0.20	yes	down	−3.78*
stu-miR530_L-2R + 2	35S:rSlAGO1/ JZ18	2.19	yes	up	1.96*	Solyc07g063510.3.1	0.45	yes	down	−3.33*
ppe-miR858_1ss4GA	35S:rSlAGO1/ JZ18	2.33	yes	up	4.45*	Solyc05g006420.3.1	0.40	yes	down	−2.11*
ath-miR171a-3p_L-3R + 1	35S:rSlAGO1/ JZ18	inf	yes	up	inf*	Solyc08g069180.3.1	0.33	yes	down	−2.23*
stu-miR8039_R + 3_1ss4CT	35S:rSlAGO1/ JZ18	inf	yes	up	13.98*	Solyc12g056040.1.1	0.11	yes	down	−6.94*
stu-miR384-5p_R + 1	35S:rSlAGO1/ JZ18	inf	yes	up	10.45*	Solyc03g113890.1.1	0.09	yes	down	−9.65*
stu-miR384-5p_R + 1	35S:rSlAGO1/ JZ18	inf	yes	up	10.45*	Solyc06g076850.3.1	0.43	yes	down	−1.54*
PC-3p-276756_24	35S:rSlAGO1/ JZ18	inf	yes	up	2.23*	Solyc05g006420.3.1	0.40	yes	down	−2.02*
PC-5p-289257_23	35S:rSlAGO1/ JZ18	inf	yes	up	7.62*	Solyc04g082420.3.1	0.37	yes	down	−3.29*
PC-5p-66618_119	35S:rSlAGO1/ JZ18	4.29	yes	up	4.79*	Solyc08g066260.3.1	0.20	yes	down	−5.79*
stu-MIR8006-p3_1ss8GA_1	35S:SlmiR168a / JZ18	-inf	yes	down	-inf*	Solyc09g097780.2.1	2.59	yes	up	3.32*
stu-MIR8007b-p3_1ss22CT	35S:SlmiR168a / JZ18	0.48	yes	down	−1.98*	Solyc09g064820.1.1	6.60	yes	up	5.89*

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