Development of EST-SSR markers and association mapping with floral traits in Syringa oblata

BMC Plant Biology

Table 2 Polymorphism information of 30 EST-SSR markers in 192 individuals. Number of alleles (N_A); number of effective alleles (N_E); Shannon’s information index (I); observed heterozygosity (H_O); expected heterozygosity (H_E); and polymorphism information content (PIC); untranslated region (UTR); coding sequence (CDS). All 30 polymorphic markers were at Hardy-Weinberg equilibrium (significance is P ≤ 0.01)

Primer name	SSR position	N_A	N_E	I	H_O	H_E	PIC
SO060	CDS	14	4.34	1.81	0.65	0.77	0.74
SO095	UTR	8	2.41	1.13	0.56	0.59	0.52
SO139	CDS	4	2.30	0.92	0.53	0.57	0.47
SO208	UTR	10	3.54	1.66	0.63	0.72	0.69
SO212	UTR	9	2.07	1.07	0.45	0.52	0.48
SO284	UTR	9	1.63	0.85	0.41	0.39	0.36
SO296	CDS	9	3.39	1.55	0.66	0.71	0.67
SO310	UTR	7	1.34	0.59	0.21	0.26	0.24
SO328	UTR	14	4.78	1.82	0.60	0.79	0.76
SO336	UTR	8	3.92	1.57	0.80	0.75	0.71
SO364	CDS	5	1.80	0.84	0.44	0.44	0.40
SO376	UTR	8	3.96	1.54	0.69	0.75	0.71
SO381	UTR	4	2.47	0.99	0.55	0.60	0.51
SO387	UTR	3	1.39	0.53	0.27	0.28	0.26
SO413	UTR	10	2.35	1.12	0.53	0.58	0.52
SO415	CDS	5	2.12	0.92	0.54	0.53	0.45
SO469	UTR	9	3.41	1.40	0.57	0.71	0.66
SO504	UTR	4	2.13	0.90	0.54	0.53	0.45
SO508	UTR	16	7.06	2.23	0.87	0.86	0.84
SO525	CDS	16	8.78	2.33	0.69	0.89	0.88
SO528	UTR	5	1.37	0.53	0.31	0.27	0.25
SO540	CDS	5	1.52	0.60	0.42	0.34	0.30
SO557	CDS	13	4.82	1.86	0.80	0.79	0.77
SO649	CDS	6	2.49	1.05	0.54	0.60	0.52
SO696	UTR	3	1.52	0.54	0.30	0.34	0.29
SO711	CDS	6	1.33	0.53	0.28	0.25	0.23
SO783	UTR	10	3.17	1.4	0.57	0.69	0.63
SO813	CDS	5	1.86	0.91	0.40	0.46	0.42
SO833	CDS	6	1.41	0.61	0.26	0.29	0.27
SO889	UTR	3	1.94	0.69	0.45	0.48	0.37
Mean		7.8	2.89	1.15	0.52	0.56	0.51

ISSN: 1471-2229