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Table 1 Summary of Selaginella assemblies

From: Comparative transcriptome analysis suggests convergent evolution of desiccation tolerance in Selaginella species

  S. sellowii S. lepidophylla S. denticulata
Total Raw Reads 138,288,472 199,259,295 114,231,403
Total Trimmed Reads 125,956,200 182,787,767 104,700,744
  Trinity SOAPdenovo Trinity SOAPdenovo Trinity SOAPdenovo
rnaQUAST
 Contigs 56,287 48,843 64,189 66,262 62,111 60,458
 Contigs > 1000 bp 37,086 10,561 31,815 10,277 32,281 14,454
 Longest contig (bp) 27,152 39,804 22,517 38,874 20,697 21,926
 Average length (bp) 2631.69 953.46 1962.86 780.02 1650.37 798.22
 N50 length 4482 4100 4061 4057 2825 2397
 Total Assembled Bases 148,130,112 46,570,041 125,993,766 51,685,348 102,506,311 48,258,718
 GC content (%) 53.22% 52.92% 50.84% 50.93% 49.74% 49.54%
 Predicted genes (GeneMarkS-T) 27,005 8,189 29,728 10,146 32,874 14,626
BUSCO
 Complete 95.10% 70.60% 93.10% 69.00% 98.30% 88.10%
Bowtie2
 Overall Alignment Rate 96.17% 87.38% 95.08% 82.89% 96.99% 88.48%
DETONATE
 RSEM-EVAL score −6.50 × 109 −8.20 × 109 −10.4 × 109 −14.3 × 109 −5.34 × 109 − 6.95 × 109
  1. Quality metrics of de novo transcriptome assemblies using Trinity and SOAPdenovo-Trans assemblers. The best values of relevant metrics are indicated in bold italic. BUSCO: Benchmarking Universal Single-Copy Orthologs. DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without Truth Evaluation