Table 1 Statistics of the PacBio sequencing data, ROI databases and ICE clustering
From: Revealing the full-length transcriptome of caucasian clover rhizome development
cDNA library | 1-6 KB |
|---|---|
PacBio sequencing | |
 polymerase reads | 720,832 |
 Reads of insert | 658,323 |
 Read bases of insert | 1,505,553,284 |
 Mean read length of insert | 2286 |
 Mean read quality of insert | 0.94 |
 Mean number of passes | 12 |
 Date size (GB) | 19.82 |
ROI databases | |
 Number of five prime reads | 506,205 |
 Number of three prime reads | 521,059 |
 Number of poly-A reads | 514,174 |
 Number of filtered short reads | 15,350 |
 Number of non-full-length reads | 193,513 |
 Number of full-length reads | 449,460 |
 Number of full-length non-chimeric reads | 441,885 |
 Average full-length non-chimeric read length | 1969 |
ICE clustering | |
 Number of consensus isoforms | 227,516 |
 Average consensus isoforms read length | 2086 |
 Number of polished high-quality isoforms | 148,836 |
 Number of polished low-quality isoforms | 78,366 |
 Percent of polished high-quality isoforms (%) | 65,42 |
 Non-redundant transcripts | 80,654 |