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Table 3 List of QTLs for mineral element content identified by at least two approaches in 137 Canadian soybean lines. The most highly associated SNP within each QTL is indicated along with the associated statistics. For each trait, a measure of its heritability (h2) is provided. The models that detected a significant marker-trait association are abbreviated as follows: C for CMLM, M for MLMM and F for FarmCPU

From: Identification of loci controlling mineral element concentration in soybean seeds

Gm

Peak SNP

QTL N°

p-value

FDR

R2%

Effect

h2%

Models

06

3,354,869

Ca_#3

2.94E-08

4.5E-03

20

−0.06

41

C/M

09

6,092,970

Ca_#4

3.70E-08

4.5E-03

21

−0.07

C/M/F

04

49,071,552

K_#1

1.75E-06

6.1E-03

17

−0.30

82

C/F

10

1,925,709

K_#3

4.31E-10

4.9E-05

31

−0.57

C/M/F

04

49,071,286

P_#1

6.12E-08

1.5E-02

22

−0.30

78

C/M/F

10

1,602,998

S_#4

2.84E-08

4.0E-03

23

0.46

93

C/M

15

3,986,243

S_#7

2.80E-07

2.3E-02

19

0.15

M/F

20

39,076,484

S_#10

9.13E-07

9.7E-03

18

0.20

C/M/F

  1. FDR = False discovery rate
  2. R2% = Indicates the proportion of total phenotypic variation for each marker