Skip to main content

Table 1 Sequencing, assembly, and annotation results of A. venetum transcriptome

From: De novo transcriptome assembly and population genetic analyses of an important coastal shrub, Apocynum venetum L

Description Number
1. Raw sequences and Assembly statistics
 High-quality reads 45,760,331
 Total nucleotides of high-quality reads (bp) 16,326,427,500
 Q20 percentage 98.31%
 GC percentage of high-quality reads 46.93%
 Number of unigenes 86,980
 Range of unigenes length (bp) 201–17,334
 N50 length of unigenes (bp) 2580
2. Bioinformatics annotations of unigenes
 Gene annotated against NR(%) 63,975 (73.55)
 Gene annotated against NT(%) 48,088 (55.28)
 Gene annotated against KO(%) 28,505 (32.77)
 Gene annotated against SwissProt(%) 53,436 (61.43)
 Gene annotated against PFAM(%) 51,451 (59.15)
 Gene annotated against GO(%) 51,733 (59.47)
 Gene annotated against KOG(%) 23,428 (26.93)
 Gene annotated against all Databases(%) 13,207 (15.18)
 Gene annotated against at least one Database(%) 68,751 (79.04)
 Gene Unannotated 18,229 (20.96)
\