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Table 1 Sequencing, assembly, and annotation results of A. venetum transcriptome

From: De novo transcriptome assembly and population genetic analyses of an important coastal shrub, Apocynum venetum L

Description

Number

1. Raw sequences and Assembly statistics

 High-quality reads

45,760,331

 Total nucleotides of high-quality reads (bp)

16,326,427,500

 Q20 percentage

98.31%

 GC percentage of high-quality reads

46.93%

 Number of unigenes

86,980

 Range of unigenes length (bp)

201–17,334

 N50 length of unigenes (bp)

2580

2. Bioinformatics annotations of unigenes

 Gene annotated against NR(%)

63,975 (73.55)

 Gene annotated against NT(%)

48,088 (55.28)

 Gene annotated against KO(%)

28,505 (32.77)

 Gene annotated against SwissProt(%)

53,436 (61.43)

 Gene annotated against PFAM(%)

51,451 (59.15)

 Gene annotated against GO(%)

51,733 (59.47)

 Gene annotated against KOG(%)

23,428 (26.93)

 Gene annotated against all Databases(%)

13,207 (15.18)

 Gene annotated against at least one Database(%)

68,751 (79.04)

 Gene Unannotated

18,229 (20.96)