From: Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny
Category of genes | Group of genes (gene number) | Gene name |
---|---|---|
Self replication | Ribosomal RNAs (8) | rRNA16c, rRNA23c, rRNA4.5c, rRNA5c |
Transfer RNAs (39) | trnA-UGCa,c, trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAUe, trnG-GCC, trnG-UCCa, trnH-GUGc, trnI-CAUc, trnI-GAUa,c, trnK-UUUa, trnL-CAAc, trnL-UAAa, trnL-UAG, trnM-CAU, trnN-GUUc, trnP-UGG, trnQ-UUG, trnR-ACGc, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GACc, trnV-UACa, trnW-CCA, trnY-GUA | |
Ribosomal protein (small subunit) (16) | rps2, rps3, rps4, rps7c, rps8, rps11, rps12a,d, rps14, rps15c, rps16a, rps18, rps19c | |
Ribosomal protein (large subunit) (11) | rpl2a,c, rpl14, rpl16a, rpl20, rpl22, rpl23c, rpl32, rpl33, rpl36 | |
DNA dependent RNA polymerase (4) | rpoA, rpoB, rpoC1, rpoC2 | |
Translation-related gene (1) | infA | |
Genes for photosynthesis | Subunits of photosystem I (5) | psaA, psaB, psaC, psaI, psaJ |
Subunits of photosystem II (15) | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
Subunits of cytochrome b/f complex (6) | petA, petBa, petDa, petG, petL, petN | |
Subunits of ATP synthase (6) | atpA, atpB, atpE, atpFa, atpH, atpI | |
Subunits of NADH dehydrogenase (13) | ndhAa, ndhBa,c, ndhC, ndhD, ndhE, ndhF, ndhG, ndhHc, ndhI, ndhJ, ndhK | |
ATP-dependent protease subunit (1) | clpP | |
Rubisco large subunit (1) | rbcL | |
Other genes | Maturase (1) | matK |
Envelop membrane protein (1) | cemA | |
c-type cytochrome biogenesis (1) | ccsA | |
Genes of unknown function | Conserved open reading frames (2) | ycf3b, ycf4 |