Table 1 The quantity and quality of the sequencing data and coverage depth of the assembled chloroplast genomes for eleven Avena species
From: Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny
Taxa | Voucher | Raw data (Gbp) | Clean data (bp) | Clean reads count | Chloroplast genome reads | Average coverage depth (×) | Maximum coverage depth (×) | Chloroplast genome size (bp) | GC content (%) | Genome Warehouse accession |
|---|---|---|---|---|---|---|---|---|---|---|
Avena atlantica | Liu 437 | 32.6 | 26,768,534,000 | 107,074,136 | 2,903,043 | 5339 | 9373 | 135,940 | 38.48 | GWHAOPC01000000 |
A. brevis | Liu 289 | 36.4 | 30,183,435,500 | 120,733,742 | 1,243,680 | 2288 | 2746 | 135,889 | 38.50 | GWHAOPA01000000 |
A. eriantha | Liu 435 | 29.8 | 24,521,134,000 | 98,084,536 | 1,361,250 | 2504 | 5454 | 135,909 | 38.41 | GWHAOPE01000000 |
A. hirtula | Liu 299 | 37.0 | 30,738,036,000 | 122,952,144 | 1,095,702 | 2015 | 2643 | 135,937 | 38.48 | GWHAOPJ01000000 |
A. longiglumis | Liu 438 | 29.6 | 24,297,359,000 | 97,189,436 | 1,115,888 | 2052 | 4569 | 135,962 | 38.49 | GWHAOPH01000000 |
A. murphyi | Liu 442 | 28.0 | 22,981,249,000 | 91,924,996 | 1,240,082 | 2281 | 5085 | 135,890 | 38.51 | GWHAOPF01000000 |
A. nuda | Liu 443 | 41.9 | 33,688,961,000 | 134,755,844 | 1,773,953 | 3263 | 5956 | 135,935 | 38.48 | GWHAOPD01000000 |
A. sativa | Liu 312 | 69.4 | 57,552,411,500 | 230,209,646 | 1,685,727 | 3101 | 4021 | 135,903 | 38.51 | GWHAOPK01000000 |
A. strigosa | Liu 315 | 37.7 | 31,317,309,000 | 125,269,236 | 1,255,620 | 2309 | 2927 | 135,935 | 38.48 | GWHAOPI01000000 |
A. ventricosa | Liu 275 | 17.4 | 14,267,461,000 | 57,069,844 | 1,039,219 | 1912 | 3178 | 135,910 | 38.41 | GWHAOPG01000000 |
A. wiestii | Liu 439 | 15.4 | 12,685,761,500 | 50,743,046 | 888,788 | 1634 | 3004 | 135,998 | 38.48 | GWHAOPB01000000 |