Skip to main content

Table 1 The quantity and quality of the sequencing data and coverage depth of the assembled chloroplast genomes for eleven Avena species

From: Comparative chloroplast genome analyses of Avena: insights into evolutionary dynamics and phylogeny

Taxa Voucher Raw data (Gbp) Clean data (bp) Clean reads count Chloroplast genome reads Average coverage depth (×) Maximum coverage depth (×) Chloroplast genome size (bp) GC content
(%)
Genome Warehouse accession
Avena atlantica Liu 437 32.6 26,768,534,000 107,074,136 2,903,043 5339 9373 135,940 38.48 GWHAOPC01000000
A. brevis Liu 289 36.4 30,183,435,500 120,733,742 1,243,680 2288 2746 135,889 38.50 GWHAOPA01000000
A. eriantha Liu 435 29.8 24,521,134,000 98,084,536 1,361,250 2504 5454 135,909 38.41 GWHAOPE01000000
A. hirtula Liu 299 37.0 30,738,036,000 122,952,144 1,095,702 2015 2643 135,937 38.48 GWHAOPJ01000000
A. longiglumis Liu 438 29.6 24,297,359,000 97,189,436 1,115,888 2052 4569 135,962 38.49 GWHAOPH01000000
A. murphyi Liu 442 28.0 22,981,249,000 91,924,996 1,240,082 2281 5085 135,890 38.51 GWHAOPF01000000
A. nuda Liu 443 41.9 33,688,961,000 134,755,844 1,773,953 3263 5956 135,935 38.48 GWHAOPD01000000
A. sativa Liu 312 69.4 57,552,411,500 230,209,646 1,685,727 3101 4021 135,903 38.51 GWHAOPK01000000
A. strigosa Liu 315 37.7 31,317,309,000 125,269,236 1,255,620 2309 2927 135,935 38.48 GWHAOPI01000000
A. ventricosa Liu 275 17.4 14,267,461,000 57,069,844 1,039,219 1912 3178 135,910 38.41 GWHAOPG01000000
A. wiestii Liu 439 15.4 12,685,761,500 50,743,046 888,788 1634 3004 135,998 38.48 GWHAOPB01000000
\