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Table 1 List of VvHM genes

From: Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

Gene Name

Accession No.

VCost.v3 ID

Chromosome

Start

End

CDS (bp)

ORF (aa)

SDG gene family

 VvSDG1

XP_019077603.1

Vitvi01g00086

1

949,657

957,893

1449

482

 VvSDG2

XP_002281246.1

Vitvi01g00484

1

5,390,829

5,401,654

1452

484

 VvSDG3

XP_002267249.1

Vitvi01g01058

1

14,007,416

14,010,547

1455

485

 VvSDG4

XP_019078100.1

Vitvi01g01765

1

22,469,075

22,482,650

1458

486

 VvSDG5

XP_010657698.1

Vitvi01g01812

1

22,873,387

22,877,304

984

328

 VvSDG6

XP_010648716.1

Vitvi04g00550

4

5,937,871

5,970,124

3336

1111

 VvSDG7

XP_019075140.1

Vitvi04g00878

4

11,443,796

11,463,685

1350

449

 VvSDG8

XP_019075187.1

Vitvi04g01029

4

15,011,615

15,039,726

1698

565

 VvSDG9

XP_002269759.2

Vitvi04g01208

4

17,398,366

17,416,188

3948

1316

 VvSDG10

XP_002281774.1

Vitvi04g01653

4

22,226,309

22,252,207

1125

375

 VvSDG11

XP_002282057.2

Vitvi05g00821

5

9,227,788

9,230,583

1554

518

 VvSDG12

XP_002282386.1

Vitvi05g00855

5

9,819,374

9,821,392

1767

588

 VvSDG13

XP_002268621.1

Vitvi05g02135

5

20,741,174

20,798,303

3207

1068

 VvSDG14

XP_010652245.1

Vitvi07g00417

7

4,010,241

4,015,186

1149

382

 VvSDG15

XP_019076867.1

Vitvi07g00675

7

7,299,138

7,313,963

2148

715

 VvSDG16

XP_019076670.1

Vitvi07g01721

7

16,552,767

16,572,286

2805

935

 VvSDG17

XP_002267602.2

Vitvi07g02035

7

20,552,339

20,557,870

1503

500

 VvSDG18

XP_002277066.1

Vitvi08g00145

8

2,654,151

2,659,935

555

184

 VvSDG19

XP_002278728.1

Vitvi08g00900

8

11,294,684

11,297,803

1434

478

 VvSDG20

XP_002276611.1

Vitvi08g01786

8

20,728,208

20,735,141

1983

661

 VvSDG21

XP_010655344.2

Vitvi10g00002

10

36,174

37,778

1512

504

 VvSDG22

XP_002272781.1

Vitvi11g00800

11

9,538,580

9,561,355

1485

494

 VvSDG23

XP_010656836.1

Vitvi11g01240

11

18,553,723

18,566,361

1752

584

 VvSDG24

XP_002274324.1

Vitvi12g00537

12

7,248,181

7,258,220

1395

465

 VvSDG25

XP_010657340.1

Vitvi12g00568

12

7,477,102

7,493,792

6600

2199

 VvSDG26

XP_002267469.2

Vitvi12g00746

12

10,000,712

10,005,486

1494

497

 VvSDG27

XP_010658301.1

Vitvi13g00002

13

12,083

63,791

2151

717

 VvSDG28

XP_002275729.1

Vitvi13g00215

13

2,012,817

2,037,101

1464

487

 VvSDG29

XP_010660173.1

Vitvi14g00738

14

12,583,680

12,614,451

582

193

 VvSDG30

XP_010660678.1

Vitvi14g01462

14

24,836,624

24,881,775

2106

702

 VvSDG31

XP_010661928.1

Vitvi15g00976

15

17,677,390

17,689,653

3012

1004

 VvSDG32

XP_019081670.1

Vitvi16g00036

16

370,309

399,658

1317

438

 VvSDG33

XP_002277774.1

Vitvi16g00290

16

5,345,035

5,346,423

1332

443

 VvSDG34

XP_019081389.1

Vitvi16g00314

16

5,891,859

5,894,009

1671

557

 VvSDG35

XP_010662976.1

Vitvi16g01288

16

20,769,710

20,783,861

3057

1019

 VvSDG36

XP_002275757.1

Vitvi16g02079

16

21,677,420

21,681,935

1203

401

 VvSDG37

XP_010664163.1

Vitvi18g00220

18

2,259,998

2,287,308

5877

1959

 VvSDG38

XP_010664254.1

Vitvi18g00318

18

3,446,050

3,490,947

1433

481

 VvSDG39

XP_019072296.1

Vitvi18g02964

18

19,242,564

19,274,978

2589

863

 VvSDG40

XP_003634538.1

Vitvi18g02965

18

19,280,780

19,290,355

1113

370

 VvSDG41

XP_010665141.1

Vitvi18g01629

18

19,587,111

19,592,826

1602

534

 VvSDG42

XP_010646790.1

Vitvi02g01790

Un

22,578,033

22,580,210

1581

526

 VvSDG43

XP_019074011.1

Vitvi10g00297

Un

28,765,455

28,776,585

3263

1127

PRMT gene family

 VvPRMT1

XP_019075123.1

Vitvi04g00275

4

2,582,427

2,595,604

1953

651

 VvPRMT2

XP_002273923.1

Vitvi05g00322

5

3,203,018

3,217,695

1578

525

 VvPRMT3

XP_002267286.2

Vitvi10g01540

10

17,242,398

17,277,211

1245

414

 VvPRMT4

XP_002282760.1

Vitvi11g00208

11

2,016,637

2,022,471

1053

351

 VvPRMT5

XP_002285026.1

Vitvi11g00426

11

4,126,320

4,146,088

1014

337

JMJ gene family

 VvJMJ1

XP_010660757.1

Vitvi02g00329

2

3,074,405

3,119,122

4488

1495

 VvJMJ2

XP_010663122.1

Vitvi02g00759

2

8,573,734

8,582,220

2199

732

 VvJMJ3

XP_010648867.1

Vitvi04g00769

4

9,601,201

9,680,561

2589

862

 VvJMJ4

XP_010652382.1

Vitvi07g00618

7

6,483,761

6,483,761

2364

787

 VvJMJ5

XP_002269129.1

Vitvi08g00216

8

4,253,675

4,259,819

393

131

 VvJMJ6

XP_010655372.1

Vitvi10g00053

10

462,316

466,886

1941

646

 VvJMJ7

XP_010655862.1

Vitvi10g01120

10

11,527,946

11,538,707

2856

952

 VvJMJ8

XP_010655918.1

Vitvi10g01394

10

14,142,558

14,157,354

3060

1019

 VvJMJ9

XP_010658392.1

Vitvi13g00630

13

5,944,228

5,969,863

4653

1551

 VvJMJ10

XP_010659626.1

Vitvi14g00196

14

2,053,704

2,057,478

1473

490

 VvJMJ11

XP_002266063.2

Vitvi14g00627

14

10,528,574

10,546,325

3537

1178

 VvJMJ12

XP_019081261.1

Vitvi15g00950

15

17,348,763

17,355,815

2694

898

 VvJMJ13

XP_002272599.2

Vitvi16g00120

16

1,798,809

1,811,815

3030

1009

 VvJMJ14

XP_010662857.1

Vitvi16g01410

16

21,915,589

21,926,695

5987

1905

 VvJMJ15

XP_010663055.1

Vitvi17g01001

17

11,978,867

11,993,275

2850

950

HDMA gene family

 VvHDMA1

XP_003631607.1

Vitvi03g00349

3

5,641,165

5,655,774

2952

984

 VvHDMA2

XP_002265069.1

Vitvi03g01141

3

16,377,478

16,379,930

2010

669

 VvHDMA3

XP_010658366.1

Vitvi13g00661

13

6,501,373

6,505,907

2805

935

 VvHDMA4

XP_002280389.1

Vitvi17g00081

17

717,752

722,776

1692

563

 VvHDMA5

XP_002275451.1

Vitvi18g00045

18

531,976

535,425

1479

492

 VvHDMA6

XP_010664183.1

Vitvi18g00243

18

2,543,733

2,568,290

2028

675

 VvHDMA7

XP_010664765.1

Vitvi18g01059

18

11,641,452

11,647,885

2316

772

HAG gene family

 VvHAG1

XP_002284766.1

Vitvi04g00414

4

4,185,433

4,190,152

495

165

 VvHAG2

XP_002272537.1

Vitvi05g00123

5

788,238

792,303

1254

417

 VvHAG3

XP_002278864.1

Vitvi05g00523

5

5,399,371

5,399,889

519

172

 VvHAG4

XP_002282836.1

Vitvi05g00524

5

5,401,210

5,402,158

543

180

 VvHAG5

XP_002278620.1

Vitvi06g00679

6

7,667,663

7,669,004

1155

384

 VvHAG6

XP_010651587.1

Vitvi06g01092

6

14,154,983

14,172,657

867

289

 VvHAG7

XP_002275146.2

Vitvi07g00052

7

77,994

88,805

1251

417

 VvHAG8

XP_010651956.1

Vitvi07g00050

7

89,628

110,743

1317

439

 VvHAG9

XP_002264391.3

Vitvi17g00723

7

948,363

958,053

1023

341

 VvHAG10

XP_002278246.1

Vitvi07g00126

7

1,190,489

1,221,867

525

175

 VvHAG11

XP_010652717.1

Vitvi07g01604

7

15,521,919

15,523,764

1266

422

 VvHAG12

XP_010653125.1

Vitvi08g00051

8

875,613

882,448

666

222

 VvHAG13

XP_010654086.1

Vitvi08g01460

8

17,298,621

17,301,373

474

157

 VvHAG14

XP_019077012.1

Vitvi08g01691

8

19,763,293

19,771,775

2001

667

 VvHAG15

XP_002264353.1

Vitvi09g01127

9

16,169,584

16,171,633

1203

400

 VvHAG16

XP_002278105.2

Vitvi11g00083

11

928,669

934,564

1572

524

 VvHAG17

XP_002270456.1

Vitvi11g00847

11

10,597,926

10,613,592

840

280

 VvHAG18

XP_002267085.1

Vitvi12g00340

12

5,074,039

5,075,368

477

159

 VvHAG19

XP_010657419.1

Vitvi13g01304

12

9,037,307

9,044,911

588

196

 VvHAG20

XP_002270840.1

Vitvi13g01879

13

101,740

106,579

825

275

 VvHAG21

XP_002273746.1

Vitvi13g00612

13

5,707,150

5,718,261

813

271

 VvHAG22

XP_002273620.1

Vitvi13g00635

13

6,006,136

6,007,252

663

221

 VvHAG23

XP_002273592.1

Vitvi13g01641

13

21,451,060

21,451,860

483

160

 VvHAG24

XP_002276364.1

Vitvi14g01459

14

24,820,195

24,822,192

615

205

 VvHAG25

XP_002273780.1

Vitvi16g00111

16

1,730,687

1,738,891

765

255

 VvHAG26

XP_002262701.1

Vitvi17g01026

17

12,379,862

12,388,649

1368

455

 VvHAG27

XP_019073388.1

Vitvi17g01073

17

390,224

405,802

930

310

 VvHAG28

XP_019071767.1

Vitvi18g02063

18

25,838,001

25,839,742

864

288

HAM gene family

 VvHAM1

XP_002282931.1

Vitvi11g00219

11

2,093,896

2,100,497

1536

512

 VvHAM2

XP_002285829.1

Vitvi18g00333

18

3,700,491

3,718,099

1140

379

HAC gene family

 VvHAC1

XP_019080308.1

Vitvi14g01230

9

22,849,657

22,861,791

3894

1297

 VvHAC2

XP_019080308.1

Vitvi14g01230

14

21,859,980

21,865,827

1974

658

HAF gene family

 VvHAF1

XP_010656962.1

Vitvi12g00328

12

4,766,938

4,820,598

5397

1799

HDA gene family

 VvHDA1

XP_002283371.1

Vitvi03g00273

3

3,061,225

3,067,402

1185

394

 VvHDA2

XP_002277742.1

Vitvi04g00077

4

781,102

787,349

1080

360

 VvHDA3

XP_019075100.1

Vitvi04g01715

4

23,072,108

23,108,432

1314

437

 VvHDA4

XP_010651716.1

Vitvi06g01425

6

19,410,537

19,425,212

1293

431

 VvHDA5

XP_002277237.1

Vitvi06g01465

6

20,001,869

20,006,704

1047

349

 VvHDA6

XP_019080589.1

Vitvi14g00998

14

18,328,471

18,356,529

1509

502

 VvHDA7

XP_002266492.1

Vitvi15g00473

15

10,328,819

10,349,872

1293

431

 VvHDA8

XP_002274270.2

Vitvi17g00365

17

4,195,887

4,225,096

2094

698

 VvHDA9

XP_019082031.1

Vitvi17g00705

17

8,144,795

8,155,931

1941

646

 VvHDA10

XP_010663108.1

Vitvi17g00894

17

10,614,427

10,630,758

1098

366

SRT gene family

 VvSRT1

XP_010652928.1

Vitvi07g01918

7

18,710,375

18,723,402

1266

422

 VvSRT2

XP_010644574.1

Vitvi19g00685

19

8,637,608

8,659,887

1404

468

HDT gene family

 VvHDT1

XP_002270966.2

Vitvi06g01399

6

19,041,783

19,047,544

1062

354

 VvHDT2

XP_010654035.1

Vitvi08g01518

8

17,962,761

17,965,626

342

114