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Table 1 Summary of MACE libraries processing and reference genome mapping (mean ± standard deviation)

From: Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes

 

Osmotic phase

Ionic phase

Libraries

14

8

Total millions of reads

5.0 ± 0.7

9.0 ± 2.4

Reads excluded after QCa (%)

7.8 ± 1.6

2.6 ± 0.3

Mapping efficiency (%)

83.6 ± 1.2

93.0 ± 0.3

Millions of mapped reads

3.8 ± 0.5

8.2 ± 2.2

Multiple aligned reads (%)

21.7 ± 3.3

19.7 ± 1.7

Millions of unique mapped reads

3.0 ± 0.4

6.6 ± 1.8

Reads after deduplication (%)

62.2 ± 3.7

53.9 ± 3.2

  1. aQC: Quality control