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Table 3 Databases of various lncRNAs obtained in plant species

From: Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation

Name

Characteristics

lncRNA and details

References

Link

PLncDB

It provides comprehensive data on Arabidopsis lncRNAs

Arabidopsis lncRNAs

[147]

http://chualab.rockefeller.edu/gbrowse2/homepage.html

PLNlncRbase

Detailed information on experimentally identified plant lncRNAs

Supply information on 1187 plant lncRNAs in

[146]

http://bioinformatics.ahau.edu.cn/PLNlncRbase/

  

43 plant species

  

PNRD

It provides information on different types of ncRNAs

150 plant species

[149]

http://structuralbiology.cau.edu.cn/PNRD

CANTATAdb

Used for annotation of identified lncRNAs

Covers information on lnc RNA on 10 plant species

[16]

http://cantata.amu.edu.pl, http://yeti.amu.edu.pl/CANTATA/

GREENC

Used for annotate lncRNAs

Annotation of more than 120,000 lncRNAs associated to 37 plant species could be done

[150]

http://greenc.sciencedesigners.com/

PLncPRO

Used for prediction of lncRNAs in plants and used fornvestigating abiotic stress responsive lncRNAs in rice and chickpea

3714 and 3457 lncRNAs in rice and chickpea for drought and salinity

[72]

http://ccbb.jnu.ac.in/plncpro.

PlaNC-TE

Provide insights about the relationship between ncRNA and TEs in plants

Information on overlapping of ncRNA and transposon elements from 40 plant genomes

[151]

http://planc-te.cp.utfpr.edu.br

EVLncRNAs

It contains lncRNA information on various species including plant

1543 lncRNAs from 77 species and also 428 plant lncRNAs from 44 plant species

[152, 153]

http://biophy.dzu.edu.cn/EVLncRNAs.

CRISPRlnc

Database for validated CRISPR/Cas9 sgRNAs for lncRNAs from variousspecies including plants

305 lncRNAs and 2102 validated sgRNAs on eight species including plant

[154]

http://www.crisprlnc.org or http://crisprlnc.xtbg.ac.cn

CANTATAdb 2.0

It provides information on annotation of plant lncRNAs

Covers information on lnc RNA on 39 plant species

[155]

http://cantata.amu.edu.pl, http://yeti.amu.edu.pl/CANTATA/

PLIT

Used for investigating of plant lncRNAs from RNA seq data.

Provides information on lncRNA from 8 plant species

[156]

 

PLncDB

Detail information on plant lncRNAs

Provides plant lincRNAs and lncNATs information

[157]

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  1. The table is updated version of [17, 61, 143]