Table 3 MapMan BINs enriched in the most highly positively correlated (> 0.8) genes in selected modules of the weighted gene co-expression network analysis made from the genes expressed in the roots of different scion/rootstock combinations of grapevine grown under two different phosphate supplies
Module | BIN | Name | Enrichment | Adjusted p-value |
|---|---|---|---|---|
MEyellow | 15.7.16 | RNA biosynthesis.transcriptional activation. C3H zinc finger transcription factor | 6.1 | 0.02 |
15.7.49 | RNA biosynthesis.transcriptional activation. FAR1 transcription factor | 6.6 | 0.00 | |
MElightgreen | 15.7.22 | RNA biosynthesis.transcriptional activation. WRKY transcription factor | 7.5 | 0.00 |
15.7.7.1 | RNA biosynthesis.transcriptional activation. AP2/ERF superfamily. ERF-type transcription factor | 11.7 | 0.00 | |
9.2.2.1 | Secondary metabolism.phenolics.flavonoid synthesis and modification.chalcone synthase | 15.3 | 0.00 | |
MEturquoise | 26.6.2.1 | External stimuli response.biotic stress.pathogen effector. NLR effector receptor | 3.5 | 0.00 |
50.1.13 | Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen | 2.0 | 0.00 | |
50.2.1 | Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group | 2.6 | 0.00 | |
50.2.4 | Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase | 2.1 | 0.00 | |
50.3.2 | Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase | 2.0 | 0.03 | |
MEgreen | 16.9.1.2.1 | RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export. TREX-2 mRNP trafficking complex. GANP/SAC3 scaffold component | 9.1 | 0.00 |
26.6.2.1 | External stimuli response.biotic stress.pathogen effector. NLR effector receptor | 2.4 | 0.01 | |
50.1.13 | Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen | 1.9 | 0.00 | |
9.1.3.1 | Secondary metabolism.terpenoids.terpenoid synthesis.mono−/sesquiterpene−/diterpene synthase | 3.9 | 0.04 | |
MEgreenyellow | 11.10.2.1.1 | Phytohormones.signalling peptides. CRP (cysteine-rich-peptide) category. GASA/GAST family. GASA precursor polypeptide | 16.0 | 0.01 |
15.7.35.1 | RNA biosynthesis.transcriptional activation. GRF-GIF transcriptional complex. GRF transcription factor component | 35.5 | 0.00 | |
19.5.2.2 | Protein degradation.peptidase families.serine-type peptidase activities.serine carboxypeptidase | 8.2 | 0.00 | |
21.3.1.1.3 | Cell wall.pectin.homogalacturonan.synthesis. CGR-type methyltransferase | 33.0 | 0.01 | |
21.4.1.1.2.2 | Cell wall.cell wall proteins.hydroxyproline-rich glycoproteins.arabinogalactan proteins (AGPs).glycoproteins.fasciclin-type arabinogalactan protein | 11.7 | 0.05 | |
MEmagenta | 11.9.2.3 | Phytohormones.strigolactone.perception and signal transduction. SMXL signal transducer | 20.2 | 0.04 |
15.7.1.5 | RNA biosynthesis.transcriptional activation. C2C2 superfamily. DOF transcription factor | 10.6 | 0.00 | |
15.7.17 | RNA biosynthesis.transcriptional activation. NAC transcription factor | 4.6 | 0.05 | |
15.7.3.5 | RNA biosynthesis.transcriptional activation. HB (Homeobox) superfamily. BEL transcription factor | 12.4 | 0.03 | |
15.7.33 | RNA biosynthesis.transcriptional activation.bHLH transcription factor | 3.9 | 0.02 | |
18.8.1.11 | Protein modification.phosphorylation. TKL kinase superfamily. LRR-XI kinase | 9.6 | 0.02 |