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Table 1 Statistics on the quality and output of the RNA-Seq libraries

From: Transcriptomic profiling of germinating seeds under cold stress and characterization of the cold-tolerant gene LTG5 in rice

Classification

Maxinum

Mininum

Average

No.raw reads

68,713,906

42,446,108

54,010,614.30

No.clean reads

67,557,942

41,624,368

53,065,008.70

No.mapped reads

54,813,859

31,960,338

42,558,059.20

% of mapped reads

85.97%

77.18%

83.29%

No.perfect mapped reads

54,006,323

31,575,048

41,939,296.60

% of perfect mapped reads

84.75%

76.28%

82.09%

Q30%

95.83%

94.52%

94.92%

Total base pair

1,591,950,262

coverage of the transcriptome

243,047,764,500