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Table 1 Summary of 30 SNPs with association to berry fresh weight (BFW), derived from transcriptomic approach based on seedless segregants exhibiting contrasting phenotypes for berry weight. All of them were validated in RxS segregants and grapevine varieties as well

From: Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches

SNP_ID

Chr

Ref

Chg

Effect

Gene_ID

Description

TSRNASNPS120468689

3

G

A

Non-synonymous coding

Vitvi03g00541

Predicted Ca2 + −dependent phospholipid-binding protein

TSRNASNPS120570749

6

C

T

Non-synonymous coding

Vitvi06g00013

Unknown Protein Function

TSRNASNPS120571906

6

G

A

Intragenic

Vitvi06g00053

Importin-5

TSRNASNPS120572210

6

C

T

Non-synonymous coding

Vitvi06g00063

Pheophorbide a oxygenase chloroplastic

TSRNASNPS120668018

8

T

C

Non-synonymous coding

Vitvi08g00791

emb|CAB82287.1| putative protein

TSRNASNPS120671217

8

G

T

Intragenic

Vitvi08g00916

Unknown Protein Function

TSRNASNPS120671218

8

A

C

Intragenic

Vitvi08g00916

Unknown Protein Function

TSRNASNPS120671409

8

A

G

Non-synonymous coding

Vitvi08g00930

4-alpha-glucanotransferase

TSRNASNP120728591

9

C

T

Intragenic

Vitvi09g01229

Anthranilate N-benzoyltransferase protein 2

TSRNASNP120729221

9

T

C

Non-synonymous coding

Vitvi09g01251

Probable serine incorporator

TSRNASNP120729235

9

T

C

Non-synonymous coding

Vitvi09g01251

Probable serine incorporator

TSRNASNPS120730012

9

T

C

Non-synonymous coding

Vitvi09g01280

Unknown protein DS12 from 2D-PAGE of leaf chloroplastic

TSRNASNP120731088

9

A

C

Non-synonymous coding

Vitvi09g01317

Unknown Protein Function

TSRNASNP120731107

9

C

G

Non-synonymous coding

Vitvi09g01317

Unknown Protein Function

TSRNASNPS120734745

9

C

T

Non-synonymous coding

Vitvi09g01459

Myb family transcription factor APL

TSRNASNP120735535

9

C

G

Non-synonymous coding

Vitvi09g01484

Ubiquitin-like protein regulator of apoptosis

TSRNASNPS120185697

14

G

T

Intragenic

Vitvi14g01672

gb|ACG39074.1| lysine ketoglutarate reductase trans-splicing related 1

TSRNASNPS120206217

15

A

T

Non-synonymous coding

Vitvi15g00647

Beta-fructofuranosidase (invertase)

TSRNASNPS120206366

15

C

T

Intragenic

Vitvi15g00679

Phosphatidate cytidylyltransferase

TSRNASNPS120206375

15

A

G

Intragenic

VviHAM2

Scarecrow-like protein 6

TSRNASNPS120206839

15

T

A

Intragenic

Vitvi15g00690

Transketolase 10

TSRNASNPS120206984

15

A

G

Intragenic

Vitvi17g00727

Serine/threonine-protein kinase AtPK2/AtPK19

TSRNASNPS120273500

17

C

G

Non-synonymous coding

Vitvi17g00758

Unknown Protein Function

TSRNASNPS120275548

17

C

G

Non-synonymous coding

Vitvi17g00817

Peroxisomal membrane anchor protein (peroxin)

TSRNASNPS120275823

17

A

C

Non-synonymous coding

Vitvi17g00834

Predicted E3 ubiquitin ligase

TSRNASNPS120277213

17

C

A

Intragenic

Vitvi17g00894

Histone deacetylase 6

TSRNASNPS120278360

17

G

A

Intragenic

Vitvi17g00977

Probable pectate lyase 5

TSRNASNPS120279487

17

A

C

Intragenic

Vitvi17g01598

Glyceraldehyde-3-phosphate dehydrogenase cytosolic

TSRNASNPS120280865

17

C

A

Intragenic

Vitvi17g01207

Transcription factor BTF3 homolog 4

TSRNASNPS120346601

19

T

G

Intragenic

Vitvi19g00043

Cytosolic sorting protein GGA2/TOM1