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Table 1 Summary of 30 SNPs with association to berry fresh weight (BFW), derived from transcriptomic approach based on seedless segregants exhibiting contrasting phenotypes for berry weight. All of them were validated in RxS segregants and grapevine varieties as well

From: Identification of SNPs and InDels associated with berry size in table grapes integrating genetic and transcriptomic approaches

SNP_ID Chr Ref Chg Effect Gene_ID Description
TSRNASNPS120468689 3 G A Non-synonymous coding Vitvi03g00541 Predicted Ca2 + −dependent phospholipid-binding protein
TSRNASNPS120570749 6 C T Non-synonymous coding Vitvi06g00013 Unknown Protein Function
TSRNASNPS120571906 6 G A Intragenic Vitvi06g00053 Importin-5
TSRNASNPS120572210 6 C T Non-synonymous coding Vitvi06g00063 Pheophorbide a oxygenase chloroplastic
TSRNASNPS120668018 8 T C Non-synonymous coding Vitvi08g00791 emb|CAB82287.1| putative protein
TSRNASNPS120671217 8 G T Intragenic Vitvi08g00916 Unknown Protein Function
TSRNASNPS120671218 8 A C Intragenic Vitvi08g00916 Unknown Protein Function
TSRNASNPS120671409 8 A G Non-synonymous coding Vitvi08g00930 4-alpha-glucanotransferase
TSRNASNP120728591 9 C T Intragenic Vitvi09g01229 Anthranilate N-benzoyltransferase protein 2
TSRNASNP120729221 9 T C Non-synonymous coding Vitvi09g01251 Probable serine incorporator
TSRNASNP120729235 9 T C Non-synonymous coding Vitvi09g01251 Probable serine incorporator
TSRNASNPS120730012 9 T C Non-synonymous coding Vitvi09g01280 Unknown protein DS12 from 2D-PAGE of leaf chloroplastic
TSRNASNP120731088 9 A C Non-synonymous coding Vitvi09g01317 Unknown Protein Function
TSRNASNP120731107 9 C G Non-synonymous coding Vitvi09g01317 Unknown Protein Function
TSRNASNPS120734745 9 C T Non-synonymous coding Vitvi09g01459 Myb family transcription factor APL
TSRNASNP120735535 9 C G Non-synonymous coding Vitvi09g01484 Ubiquitin-like protein regulator of apoptosis
TSRNASNPS120185697 14 G T Intragenic Vitvi14g01672 gb|ACG39074.1| lysine ketoglutarate reductase trans-splicing related 1
TSRNASNPS120206217 15 A T Non-synonymous coding Vitvi15g00647 Beta-fructofuranosidase (invertase)
TSRNASNPS120206366 15 C T Intragenic Vitvi15g00679 Phosphatidate cytidylyltransferase
TSRNASNPS120206375 15 A G Intragenic VviHAM2 Scarecrow-like protein 6
TSRNASNPS120206839 15 T A Intragenic Vitvi15g00690 Transketolase 10
TSRNASNPS120206984 15 A G Intragenic Vitvi17g00727 Serine/threonine-protein kinase AtPK2/AtPK19
TSRNASNPS120273500 17 C G Non-synonymous coding Vitvi17g00758 Unknown Protein Function
TSRNASNPS120275548 17 C G Non-synonymous coding Vitvi17g00817 Peroxisomal membrane anchor protein (peroxin)
TSRNASNPS120275823 17 A C Non-synonymous coding Vitvi17g00834 Predicted E3 ubiquitin ligase
TSRNASNPS120277213 17 C A Intragenic Vitvi17g00894 Histone deacetylase 6
TSRNASNPS120278360 17 G A Intragenic Vitvi17g00977 Probable pectate lyase 5
TSRNASNPS120279487 17 A C Intragenic Vitvi17g01598 Glyceraldehyde-3-phosphate dehydrogenase cytosolic
TSRNASNPS120280865 17 C A Intragenic Vitvi17g01207 Transcription factor BTF3 homolog 4
TSRNASNPS120346601 19 T G Intragenic Vitvi19g00043 Cytosolic sorting protein GGA2/TOM1