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Table 3 Proteins unique for the nuclear samples of healthy potato leaves

From: Nuclear proteome of virus-infected and healthy potato leaves

Accession Description (Solanum tuberosum Group Phureja DM1–3)a Description (Blast2Go search)b PSM valuec (healthy) PSM valuec (PVA-infected) Groupd
Score_H1 Score_H2 Score_H3
PGSC0003DMP400016511 Dnajc14 protein homeobox protein Hox-A10 1 2 1 0 H3P0
PGSC0003DMP400012698 Histone H2B histone H2B 48 102 0 0 H2P0
PGSC0003DMP400040333 Calreticulin calreticulin-3-like isoform X1 0 8 6 0 H2P0
PGSC0003DMP400051884 Pinin/SDK/memA protein pinin 0 4 4 0 H2P0
PGSC0003DMP400027372 Class II knotted-like homeobox protein homeobox protein knotted-1-like 3 isoform X2 0 4 3 0 H2P0
PGSC0003DMP400048828 Splicing factor splicing factor 3B subunit 1 0 4 2 0 H2P0
PGSC0003DMP400022318 RNA binding protein heterogeneous nuclear ribonucleoprotein 1 1 0 5 0 H2P0
PGSC0003DMP400026205 U1 small nuclear ribonucleoprotein 70 kDa U1 small nuclear ribonucleoprotein 70 kDa 2 0 1 0 H2P0
PGSC0003DMP400054431 Elongation factor P (EF-P) elongation factor P 0 1 2 0 H2P0
PGSC0003DMP400031700 Elongation factor TuA, chloroplastic elongation factor TuA, chloroplastic 0 6 7 0 H2P0
PGSC0003DMP400022105 PGR5 1A, chloroplastic PGR5-like protein 1B, chloroplastic 0 2 2 0 H2P0
PGSC0003DMP400006029 60S ribosomal protein L12 60S ribosomal protein L12 2 5 8 4 H3P1
PGSC0003DMP400034967 Glycoprotein 60S ribosomal protein L14–1 2 3 7 6 H3P1
PGSC0003DMP400044310 Small nuclear ribonucleoprotein polypeptide small nuclear ribonucleoprotein E-like 1 7 2 2 H3P1
PGSC0003DMP400002893 Snakin-2 snakin-2 1 1 6 8 H3P1
PGSC0003DMP400034062 Nucleic acid binding protein RNA-binding protein 2-like isoform X1 2 1 1 5 H3P1
  1. aDescription (Solanum tuberosum Group Phureja DM1–3 Genome Annotation v3.4)
  2. bDescription (Blast2GO search against protein sequences)
  3. cThe number of Peptide Spectrum Matches (the total number of identified peptides matched for the protein). Score_H1-H3 indicate values for each three experiment. In PVA-infected samples, the positive value is for Score_P1 or Score_P3. The other scores were zero
  4. dH3P0, proteins detected in all three healthy samples but no PVA sample; H2P0, proteins detected in two of three healthy samples but no PVA sample; H3P1, proteins detected in all three healthy samples and in one PVA sample