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Table 1 Differences in the abundance of proteins that were detected common in PVA-infected and healthy samples (groups H3P3, H3P2, H2P3, H2P2, Fig. 1) as analysed using the normalised spectral abundance factor - power law global error model (NSAF-PLGEM)

From: Nuclear proteome of virus-infected and healthy potato leaves

Accession Description (Solanum tuberosum Group Phureja DM1–3)a Description (Blast2Go search)b NSAF valuec (Healthy) NSAF valuec (PVA-infected) FDRd
Score_H1 Score_H2 Score_H3 Score_P1 Score_P2 Score_P3
PGSC0003DMP400024227 Kunitz trypsin inhibitor miraculin-like NA 0.0004 0.0008 0.0066 0.0038 0.0015 0.01
PGSC0003DMP400053772 60S ribosomal protein L13 60s ribosomal protein l13–1-like NA 0.0020 0.0031 0.0214 0.0030 0.0029 0.02
PGSC0003DMP400052757 Histone H2B probable histone H2B.3 0.1485 0.0481 0.0419 NA 0.0473 0.0380 0.03
PGSC0003DMP400062436 Ribosomal protein L23 60s ribosomal protein l23a-like 0.0093 NA 0.0012 NA 0.0008 0.0011 0.03
PGSC0003DMP400031685 Ribosomal protein L27a 60s ribosomal protein l27a-3-like NA 0.0008 0.0008 0.0049 0.0015 0.0011 0.05
PGSC0003DMP400024215 P18 histone deacetylase complex subunit sap18-like NA 0.0016 0.0008 0.0082 0.0008 0.0011 0.05
PGSC0003DMP400042811 60S ribosomal protein L18 60S ribosomal protein L18–2-like NA 0.0020 0.0027 0.0082 0.0057 0.0033 0.05
PGSC0003DMP400052999 Spliceosomal protein U2 small nuclear ribonucleoprotein B″ 0 0.0016 0.0012 0.0082 0.0019 0.0015 0.05
  1. aDescription (Solanum tuberosum Group Phureja DM1–3 Genome Annotation v3.4)
  2. bDescription (Blast2GO search against protein sequences)
  3. cNormalized Spectral Abundance Factor for the protein. Score_H1-H3 and Score_P1-P3 indicate values for each three experiment. NA, not applicable
  4. dFalse discovery rate value