Nuclear proteome of virus-infected and healthy potato leaves

BMC Plant Biology

Table 1 Differences in the abundance of proteins that were detected common in PVA-infected and healthy samples (groups H3P3, H3P2, H2P3, H2P2, Fig. 1) as analysed using the normalised spectral abundance factor - power law global error model (NSAF-PLGEM)

Accession	Description (Solanum tuberosum Group Phureja DM1–3)^a	Description (Blast2Go search)^b	NSAF value^c (Healthy)			NSAF value^c (PVA-infected)			FDR^d
Accession	Description (Solanum tuberosum Group Phureja DM1–3)^a	Description (Blast2Go search)^b	Score_H1	Score_H2	Score_H3	Score_P1	Score_P2	Score_P3	FDR^d
PGSC0003DMP400024227	Kunitz trypsin inhibitor	miraculin-like	NA	0.0004	0.0008	0.0066	0.0038	0.0015	0.01
PGSC0003DMP400053772	60S ribosomal protein L13	60s ribosomal protein l13–1-like	NA	0.0020	0.0031	0.0214	0.0030	0.0029	0.02
PGSC0003DMP400052757	Histone H2B	probable histone H2B.3	0.1485	0.0481	0.0419	NA	0.0473	0.0380	0.03
PGSC0003DMP400062436	Ribosomal protein L23	60s ribosomal protein l23a-like	0.0093	NA	0.0012	NA	0.0008	0.0011	0.03
PGSC0003DMP400031685	Ribosomal protein L27a	60s ribosomal protein l27a-3-like	NA	0.0008	0.0008	0.0049	0.0015	0.0011	0.05
PGSC0003DMP400024215	P18	histone deacetylase complex subunit sap18-like	NA	0.0016	0.0008	0.0082	0.0008	0.0011	0.05
PGSC0003DMP400042811	60S ribosomal protein L18	60S ribosomal protein L18–2-like	NA	0.0020	0.0027	0.0082	0.0057	0.0033	0.05
PGSC0003DMP400052999	Spliceosomal protein	U2 small nuclear ribonucleoprotein B″	0	0.0016	0.0012	0.0082	0.0019	0.0015	0.05

^aDescription (Solanum tuberosum Group Phureja DM1–3 Genome Annotation v3.4)
^bDescription (Blast2GO search against protein sequences)
^cNormalized Spectral Abundance Factor for the protein. Score_H1-H3 and Score_P1-P3 indicate values for each three experiment. NA, not applicable
^dFalse discovery rate value

ISSN: 1471-2229