I. QTLs of quantitative traits using interval mapping and multiple QTL model method | |||||||||||
Trait | Year | LG | Cofactor Marker | QTL | Genetic Position | Physical Position | LOD | explained variations (%) | |||
Start (cM) | Final (cM) | Interval (cM) | Start (bp) | Final (bp) | |||||||
Fruit weight (FW) | 2015 | 4 | Marker415082371 | qP-FW4.11 | 97.3 | 98.289 | 0.99 | 15,082,371 | 16,710,388 | 2.81 | 7.0 |
2016 | 4 | Marker46320002 | qP-FW4.22 | 45.027 | 45.421 | 0.39 | 6,316,366 | 6,320,223 | 2.47 | 6.4 | |
2016 | 5 | Marker57632555 | qP-FW5.12 | 55.908 | 56.194 | 0.29 | 7,318,892 | 7,816,084 | 2.2 | 5.3 | |
2016 | 6 | Marker628159465 | qP-FW6.12 | 108.055 | 108.055 | 0.00 | 28,159,465 | 28,159,465 | 2.54 | 5.8 | |
Fruit diameter (FD) | 2015 | 4 | Marker415082371 | qP-FD4.11 | 97.3 | 98.289 | 0.99 | 15,082,371 | 16,710,388 | 3.84 | 10.3 |
2016 | 4 | Marker46320002 | qP-FD4.22 | 45.027 | 45.027 | 0.00 | 6,320,002 | 6,320,002 | 2.59 | 5.9 | |
2015 | 5 | Marker57664342 | qP-FD5.11 | 55.908 | 55.908 | 0.00 | 7,664,342 | 7,664,342 | 2.16 | 6.8 | |
2016 | 5 | Marker57632555 | qP-FD5.22 | 55.908 | 56.194 | 0.29 | 7,318,892 | 7,816,084 | 2.67 | 6.0 | |
Percentage of red skin color (PSC) | 2016 | 1 | Marker121499106 | qP-PSC1.12 | 56.814 | 57.179 | 0.37 | 21,487,305 | 21,513,105 | 2.8 | 6.4 |
2016 | 3 | Marker310648307 | qP-PSC3.11 | 108.701 | 108.709 | 0.08 | 10,648,307 | 10,838,614 | 2.06 | 4.9 | |
2015 | 4 | Marker419804890 | qP-PSC4.11 | 121.898 | 121.915 | 0.02 | 19,804,890 | 19,842,357 | 2.58 | 7.0 | |
2016 | 4 | Marker428152553 | qP-PSC4.22 | 149.991 | 150.074 | 0.08 | 28,152,553 | 28,561,890 | 3.27 | 7.5 | |
2015 | 6 | Marker626821847 | qP-PSC6.11 | 99.526 | 99.537 | 0.01 | 26,821,847 | 26,822,849 | 2.52 | 6.6 | |
Eating quality (EQ) | 2016 | 1 | Marker121482495 | qP-EQ 1.12 | 55.794 | 56.344 | 0.55 | 21,332,095 | 21,482,979 | 2.55 | 7.0 |
2015 | 1 | Marker126704889 | qP-EQ 1.21 | 77.286 | 77.458 | 0.17 | 26,561,825 | 26,750,141 | 2.56 | 6.8 | |
Flavor (FV) | 2016 | 1 | Marker127158729 | qP-FV1.12 | 78.031 | 80.198 | 2.17 | 26,694,116 | 27,334,450 | 3.36 | 7.7 |
2016 | 1 | Marker128065739 | qP-FV1.22 | 83.271 | 86.952 | 3.68 | 27,653,862 | 28,166,262 | 3.52 | 8.1 | |
2016 | 3 | Marker33722468 | qP-FV3.12 | 31.417 | 70.374 | 38.96 | 3,128,322 | 4,476,565 | 4.56 | 10.4 | |
2015 | 4 | Marker417553353 | qP-FV4.11 | 100.574 | 103.631 | 3.06 | 15,270,537 | 17,635,472 | 2.99 | 6.7 | |
2015 | 5 | Marker5638231 | qP-FV5.11 | 20.72 | 20.72 | 0.00 | 638,231 | 638,231 | 2.2 | 13.9 | |
2015 | 5 | Marker51499828 | qP-FV5.21 | 42.642 | 42.897 | 0.25 | 1,499,828 | 1499,831 | 2.33 | 5.3 | |
II. QTLs of qualitative traits using Kruskal-Wallis method | |||||||||||
Trait | Year | LG | Cofactor marker | QTL | Genetic Position | Physical Position | K* | Signif. | |||
Start (cM) | Final (cM) | Interval (cM) | Start (bp) | Final (bp) | |||||||
Red in flesh (RF) | 2016 | 1 | Marker124532043 | qP-RF1.12 | 68.951 | 72.768 | 3.82 | 24,430,498 | 25,072,844 | 11.255 | **** |
2015 | 1 | Marker124908662 | qP-RF1.2.1 | 68.826 | 76.049 | 7.22 | 24,397,147 | 26,479,742 | 8.896 | **** | |
Red around pit (RP) | 2016 | 1 | Marker126704889 | qP-RP1.12 | 77.016 | 77.286 | 0.27 | 26,671,055 | 26,704,889 | 7.21 | ** |
2015 | 1 | Marker126704889 | qP-RP1.21 | 77.286 | 77.286 | 0.00 | 26,704,889 | 26,704,889 | 6.673 | ** | |
2016 | 1 | Marker126747840 | qP-RP1.32 | 77.458 | 77.458 | 0.00 | 26,747,840 | 26,750,141 | 8.585 | ** | |
2015 | 1 | Marker126747840 | qP-RP1.41 | 77.458 | 77.458 | 0.00 | 26,747,840 | 26,750,141 | 6.053 | ** | |
2016 | 1 | Marker126757867 | qP-RP1.52 | 77.56 | 77.56 | 0.00 | 26,757,867 | 26,757,867 | 12.311 | **** | |
2015 | 1 | Marker126757867 | qP-RP1.61 | 77.56 | 77.56 | 0.00 | 26,757,867 | 26,757,867 | 6.595 | ** | |
2016 | 1 | Marker127176678 | qP-RP1.72 | 79.16 | 79.16 | 0.00 | 27,176,678 | 27,176,678 | 13.627 | **** | |
2015 | 1 | Marker127176678 | qP-RP1.81 | 79.16 | 79.16 | 0.00 | 27,176,678 | 27,176,678 | 6.063 | ** | |
Adherence to Pit (AP) | 2016 | 3 | Marker37112788 | qP-AP3.12 | 78.489 | 86.066 | 7.58 | 6,258,941 | 7,861,876 | 4.788 | ** |
2015 | 3 | Marker37112788 | qP-AP3.21 | 78.489 | 86.066 | 7.58 | 6,258,941 | 7,861,876 | 5.768 | ** | |
2016 | 7 | Marker715748214 | qP-AP7.12 | 44.76 | 44.76 | 0.00 | 15,748,214 | 15,748,214 | 11.619 | **** | |
2015 | 7 | Marker715748214 | qP-AP7.21 | 44.76 | 44.76 | 0.00 | 15,748,214 | 15,748,214 | 12.766 | **** | |
2015 | 4 | Marker423822119 | qP-AP4.11 | 141.869 | 142.718 | 0.85 | 23,822,117 | 23,822,119 | 9.372 | *** | |
2016 | 4 | Marker414000094 | qP-AP4.22 | 76.372 | 76.372 | 0.00 | 14,000,094 | 14,000,094 | 7.168 | ** | |
2016 | 4 | Marker418581993 | qP-AP4.32 | 110.133 | 110.133 | 0.00 | 18,581,993 | 18,581,993 | 7.073 | ** | |
Fruit development period (FDP) | 2016 | 7 | Marker72036314 | qP-FDP7.12 | 2.454 | 2.521 | 0.07 | 1,838,911 | 2,036,314 | 6.564 | ** |
2015 | 7 | Marker72036314 | qP-FDP7.21 | 2.454 | 2.521 | 0.07 | 1,838,911 | 2,036,314 | 5.472 | ** | |
2016 | 4 | Marker420753150 | qP-FDP4.12 | 126.847 | 126.847 | 0.00 | 20,753,150 | 20,753,150 | 11.007 | **** | |
2015 | 4 | Marker45665856 | qP-FDP4.21 | 40.716 | 40.716 | 0.00 | 5,665,842 | 5,665,856 | 6.152 | ** | |
2015 | 4 | Marker416420904 | qP-FDP4.31 | 108.949 | 108.949 | 0.00 | 16,420,904 | 16,420,904 | 8.099 | **** | |
Fruit fiber content (FFC) | 2015 | 2 | Marker27416433 | qP-FFC2.11 | 30.062 | 30.353 | 0.29 | 7,416,433 | 7,501,740 | 4.244 | **** |
2016 | 3 | Marker314273878 | qP-FFC3.12 | 124.161 | 124.346 | 0.19 | 14,273,878 | 14,298,880 | 3.95 | ** | |
2015 | 3 | Marker316663661 | qP-FFC3.21 | 138 | 138.039 | 0.04 | 16,663,659 | 16,663,661 | 10.159 | *** | |
2016 | 7 | Marker76260019 | qP-FFC7.12 | 12.237 | 12.237 | 0.00 | 6,260,019 | 6,260,019 | 6.52 | ** | |
2015 | 7 | Marker76260019 | qP-FFC7.21 | 12.237 | 12.237 | 0.00 | 6,260,019 | 6,260,019 | 8.318 | ** |