Skip to main content

Table 4 Candidate DEGs that are inconsistent between the CT_102vsCT_55 and LT_102vsLT_55 comparison groups

From: Identification of candidate tolerance genes to low-temperature during maize germination by GWAS and RNA-seq approaches

Gene ID

CT_102vsCT_55

LT_102vsLT_55

Gene function

Arabidopsis best hit

Rice best hit

Zm00001d034319

no

down

inositol phosphoryl ceramide-B C-26 hydroxylase

(ATFAH1, FAH1) fatty acid hydroxylase 1

fatty acid hydroxylase putative expressed

Zm00001d025379

no

down

photoperiod responsive protein

(ATCMPG2, CMPG2) CYS MET PRO and GLY protein 2

U-box domain containing protein expressed

Zm00001d021653

no

down

glucose-6-phosphate/phosphate translocator 2

(ATGPT2, GPT2) glucose-6-phosphate/phosphate translocator 2

transporter family protein putative expressed

Zm00001d039219

no

down

uncharacterized

pleckstrin homology (PH) domain-containing protein

pleckstrin homology domain-containing protein-related taxo putative expressed

Zm00001d002241

no

down

uncharacterized

no

AT hook motif family protein expressed

Zm00001d002677

no

down

uncharacterized

no

coiled-coil domain-containing protein 124 putative expressed

Zm00001d002676

no

up

pseudouridine synthase family protein

pseudouridine synthase family protein

coiled-coil domain-containing protein 139 putative expressed

Zm00001d038373

no

up

uncharacterized

(SOS5) fasciclin-like arabinogalactan family protein

fasciclin-like arabinogalactan protein putative expressed

Zm00001d029193

no

up

uncharacterized

SKU5 similar 3 (sks3)

monocopper oxidase putative expressed

Zm00001d012512

no

up

uncharacterized

protein of unknown function (DUF3133)

expressed protein

  1. The list consists of six parts: gene ID, gene function description, up- or downregulation in the CT_102vsCT_55 and LT_102vsLT_55 comparison group, and Arabidopsis and rice best hits