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Table 3 Functions of candidate genes that are directly associated with germination traits

From: Identification of candidate tolerance genes to low-temperature during maize germination by GWAS and RNA-seq approaches

Trait

SNP

Gene ID

Gene function

RGR

PUT-163a-149,007,696-748

Zm00001d002243

uncharacterized

RGL/RSVI

SYN30173

Zm00001d013415

probable receptor protein kinase TMK1

RSVI

SYN4961

Zm00001d018864

histone deacetylase

RRSA

PZE-103072583

Zm00001d041438

protein ROOT HAIR DEFECTIVE 3 homolog 1

RRSA

SYN29778

Zm00001d002676

pseudouridine synthase family protein

RRSA

PZE-108068725

Zm00001d010670

glycerol-3-phosphate dehydrogenase

RRV

PZE-104024779

Zm00001d049442

polyadenylation and cleavage factor homolog 4

RRV

PZE-108064544

Zm00001d010497

uncharacterized

RRV/RVI

PZE-105034900

Zm00001d013794

NA

RGI

SYN5516

Zm00001d023538

long chain acyl-CoA synthetase 9, chloroplastic

RVI

SYN25470

Zm00001d029193

uncharacterized

XYRGL

PZE-110060997

Zm00001d025380

uncharacterized

KSRGR

PUT-163a-88,747,038-4526

Zm00001d034313

seed maturation protein

KSRSVI

PUT-163a-78,076,151-4108

Zm00001d008224

DNA-binding protein