Table 2 Putative cis-acting regulatory elements identified in the promoter sequence of BpMYB61 using the Plant CARE database
Cis element | Position | Sequence | Function of site |
|---|---|---|---|
5UTR Py-rich stretch | + 680、 + 688、 + 684、 + 682、 + 686 | TTTCTCTCTCTCTC | High efficiency transcriptional element |
ARE | + 282、-443 | TGGTTT | Anaerobic-induced response element |
Box I | − 126 | TTTCAAA | Light response element |
CAAT-box | + 86、-101、-102、-125、 + 226 etc. | CAAT、CAATT、CCAAT | Cis-regulatory elements in promoter and enhancer |
CAT-box | − 471 | GCCACT | Meristem expression regulatory element |
CCAAT-box | − 761 | CAACGG | MYBHv1 binding site |
G-box | + 251、-270 | GCCTTGTGTAG | Light response element |
GA-motif | − 626 | AAAGATGA | Partial light response element |
GAG-motif | + 397、-672 | AGAGATG | Partial light response element |
GARE-motif | + 599 | AAACAGA | Gibberellin response element |
GCN4_motif | + 34、-250、-94 | CAAGCCA | Endosperm expression element |
I-box | − 551 | CTCTTATGCT | Partial light response element |
MBS | + 586 | TAACTG | MYB binding sites involving drought induced response |
O2-site | + 87 | GATGACATGG | Corn protein metabolic regulatory element |
RY-element | + 329 | CATGCATG | Seed specific expression regulatory element |
Skn-1_motif | −88 | GTCAT | Endosperm expression element |
Sp1 | + 135 | CC(G/A)CCC | Light response element |
TATA-box | − 78、-502、-339、 + 804、 + 182 etc. | TTTTA、TATA、TATTTAAA | Transcription initiation-30 core promoter element |
TCA-element | − 395 | CCATCTTTTT | Salicylic acid response element |
TCCC-motif | + 674、 + 818 | TCTCCCT | Partial light response element |
Unnamed__4 | −22、 + 727、 + 675、 + 819 etc. | CTCC | |
box E | − 306 | ACCCATCAAG | |
box S | + 749 | AGCCACC | |
chs-Unit 1 m1 | +192 | ACCTAACCTCC | Partial light response element |
circadian | −234 | CAANNNNATC | Rhythm control element |