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Table 2 Plastid genes and functional groups included in analyses

From: Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid genes

Functional groups

Genes

Photosystem I (PSA)

psaA, psaB, psaC, psaI, psaJ

Photosystem II (PSB)

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbL, psbM, psbN, psbT, psbZ

Cytochrome B6f complex (PET)

petA, petB, petD, petG, petF, petN

ATP synthase (ATP)

atpA, atpB, atpE, atpF, atpH, atpI

Rubisco large subunit (Rubisco)

rbcL

RNA polymerase (RPO)

rpoA, rpoB, rpoC1, rpoC2

Ribosomal proteins large subunit (RPL)

rpl2, rpl14, rpl16, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36

Ribosomal proteins small subunit (RPS)

rps2, rps3, rps4, rps7, rps8, rps11, rps12, rps14, rps15, rps18, rps19

NADH dehydrogenase (NDH)

ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG ndhH ndhI ndhJ ndhK

Other genes (OG)

Conserved coding frame

ycf1, ycf2, ycf3, ycf4

Acetyl-CoA-carboxylase

accD

ATP-dependent protease

clpP

Cytochrome c biogenesis

ccsA

Membrane protein

cemA

Maturase

matK