Identification of small RNAs during cold acclimation in Arabidopsis thaliana

BMC Plant Biology

Table 3 Examples of cold acclimation induced cis-NATs pairs that produce siRNAs resembling the classical nat-siRNA expression

Gene 1	sense transcript	FC	Gene 2	antisense transcript	FC
6 h
AT2G22080	Transmembrane protein	4.75	AT2G22090	UBP1-associated proteins 1A	−1.41
2 d
AT5G20020	RAS-related GTP-binding nuclear protein 2	2.58	AT5G20030	Plant Tudor-like RNA-binding protein	−2.17
AT3G11830	TCP-1/cpn60 chaperonin family protein	2.86	AT3G11840	Plant U-box 24	−2.9
AT1G03090	Methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)	−2.5	AT1G03100	Pentatricopeptide repeat (PPR) superfamily protein	2.47
AT1G72030	Acyl-CoA N-acyltransferases (NAT) superfamily protein	−2.3	AT1G72040	Deoxyribonucleoside kinase	2.44
AT2G40420	Transmembrane amino acid transporter family protein	−2.3	AT2G40430	SMALL ORGAN 4	2.32
AT5G52440	HIGH CHLOROPHYLL FLUORESCENCE 106	−1.7	AT5G52450	MATE efflux family protein	2.9
AT3G16800	E GROWTH-REGULATING 3	−1.4	AT3G16810	Pumilio 24	5.5
AT2G22080	Transmembrane protein	3.13	AT2G22090	UBP1-associated proteins 1A	−1.51
AT1G13930	Oleosin-B3-like protein	4.53	AT1G13940	T-box transcription factor, putative (DUF863)	−1.31

Sense transcript and antisense transcript fold change ≥2 or ≤ −2, Benjamini-Hochberg corrected p-value ≤0.05 and siRNA expression fold change ≥2, Benjamini-Hochberg corrected p-value ≤0.05.

ISSN: 1471-2229