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Table 2 Overview of DE nat-siRNAs including expression analysis of the underlying cis- or trans-transcript pairs

From: Identification of small RNAs during cold acclimation in Arabidopsis thaliana

Time points

sRNA clusters

↑ ↑

↑ ─

↓ ─

─ ─

↑ ↓

3 h cis-NATs

up

1

5

 

3

 

down

   

21

 

6 h cis-NATs

up

1

20

 

26

1

down

   

8

 

2 d cis-NATs

up

15

93

7

270

9

down

   

8

 

Non-redundant

 

16

104

308

9

3 h trans-NATs

up

   

8

 

down

   

33

 

6 h trans-NATs

up

 

6

 

24

 

down

2

7

 

15

 

2 d trans-NATs

up

 

9

11

75

 

down

 

1

13

13

 

Non-redundant

 

2

14

18

95

 
  1. The two symbols in the five columns at the right represent the pairing cis- or trans-transcript partners and indicate their expression as follows: ↑ = upregulated, ↓ = downregulated, ─ = unchanged (unchanged refers to FDR > 0.05 and/or fold change FC ≥ 2 & ≤ −2).
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BMC Plant Biology

ISSN: 1471-2229

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