Repeat | Lineage/class | Proportion of repeat in monoploid genomes [%] | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
FPF | FPW | FAR | FGI | FGL | FMA | LM2 | LMM | LP2 | LPN | |||
LTR retroelements | Ty1/Copia | Maximus-SIRE | 1.72 | 1.65 | 1.69 | 1.78 | 1.84 | 1.93 | 0.89 | 0.87 | 1.16 | 1.25 |
Angela | 4.43 | 4.53 | 3.33 | 4.86 | 2.83 | 2.54 | 3.63 | 3.32 | 4.52 | 4.13 | ||
TAR (Tont) | 0.3 | 0.27 | 0.28 | 0.30 | 0.31 | 0.34 | 0.28 | 0.25 | 0.24 | 0.25 | ||
Tork (Tnt) | 0.05 | 0.04 | 0.05 | 0.05 | 0.05 | 0.06 | 0.07 | 0.07 | 0.08 | 0.07 | ||
Ale (Hopscotch) | 0.1 | 0.07 | 0.07 | 0.07 | 0.04 | 0.03 | 0.22 | 0.22 | 0.14 | 0.14 | ||
Ivana-Oryoco | 0.05 | 0.05 | 0.03 | 0.07 | 0.02 | 0.02 | 0.03 | 0.02 | 0.01 | 0.02 | ||
TotalTy1/Copia | 6.65 | 6.61 | 5.45 | 7.13 | 5.09 | 4.92 | 5.12 | 4.75 | 6.15 | 5.86 | ||
Ty3/Gypsy | Athila | 6.32 | 6.88 | 6.73 | 6.02 | 4.96 | 5.56 | 25.69 | 23.54 | 30.33 | 24.4 | |
Chromovirideae | 9.6 | 9.57 | 7.97 | 7.40 | 7.35 | 6.17 | 7.11 | 6.63 | 7.49 | 6.97 | ||
Ogre-Tat | 12.61 | 12.03 | 8.65 | 8.40 | 6.76 | 4.22 | 5.10 | 5.20 | 5.83 | 6.68 | ||
TotalTy3/Gypsy | 28.53 | 28.48 | 23.35 | 21.82 | 19.07 | 15.95 | 37.90 | 35.37 | 43.65 | 38.05 | ||
Unclassified LTR elements | 5.51 | 5.15 | 6.35 | 4.43 | 7.14 | 5.35 | 4.55 | 4.14 | 5.54 | 5.15 | ||
Other | LINE | 0.26 | 0.27 | 0.29 | 0.37 | 0.27 | 0.23 | 0.34 | 0.31 | 0.20 | 0.23 | |
DNA transposons | 2.35 | 2.16 | 1.95 | 1.81 | 1.44 | 1.45 | 2.38 | 2.25 | 2.08 | 2.15 | ||
Tandem repeats | 5.52 | 5.53 | 3.41 | 14.63 | 2.55 | 3.63 | 8.67 | 9.86 | 4.20 | 4.99 | ||
rRNA genes | 1.13 | 1.07 | 0.57 | 0.50 | 0.43 | 0.56 | 1.48 | 2.03 | 1.23 | 2.10 | ||
Unclassified repeats | 13.79 | 13.94 | 10.82 | 12.76 | 9.39 | 8.29 | 10.04 | 9.86 | 8.51 | 9.02 |