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Table 3 The top 15 most represented GO terms of up- and down-regulated genes for the R genome of F1 vs. R. sativus in the biological process category

From: Revealing biomass heterosis in the allodiploid xBrassicoraphanus, a hybrid between Brassica rapa and Raphanus sativus, through integrated transcriptome and metabolites analysis

 

GO

Term

Anno-tated

Sig-nifi-cant

Expect-ed

Fisher

FDR

Level

UP

GO:0080027

Response to herbivore

27

7

0.35

4.10E-08

0.000192

4

GO:0005983

Starch catabolic process

29

7

0.38

7.10E-08

0.000192

7

GO:0005982

Starch metabolic process

94

10

1.22

4.10E-07

0.00074

7

GO:0009251

Glucan catabolic process

80

9

1.04

9.70E-07

0.001313

7

GO:0044247

Cellular polysaccharide catabolic process

87

9

1.13

2.00E-06

0.002166

6

GO:0010597

Green leaf volatile biosynthetic process

4

3

0.05

8.60E-06

0.006653

7

GO:0019372

Lipoxygenase pathway

4

3

0.05

8.60E-06

0.006653

6

GO:0005977

Glycogen metabolic process

25

5

0.32

1.50E-05

0.008664

5

GO:0006112

Energy reserve metabolic process

25

5

0.32

1.50E-05

0.008664

5

GO:0044275

Cellular carbohydrate catabolic process

112

9

1.45

1.60E-05

0.008664

5

GO:0006690

Icosanoid metabolic process

8

3

0.1

0.00012

0.05415

5

GO:1901568

Fatty acid derivative metabolic process

8

3

0.1

0.00012

0.05415

4

GO:0009607

Response to biotic stimulus

1752

41

22.74

0.00019

0.07581

3

GO:0043207

Response to external biotic stimulus

1704

40

22.12

0.00021

0.07581

4

GO:0051707

Response to other organism

1704

40

22.12

0.00021

0.07581

3

DOWN

GO:0015979

Photosynthesis

366

67

13.44

5.70E-28

3.09E-24

4

GO:0009416

Response to light stimulus

1211

107

44.46

2.70E-17

7.31E-14

5

GO:0019684

Photosynthesis, light reaction

196

37

7.2

1.90E-16

3.43E-13

5

GO:0009314

Response to radiation

1257

107

46.15

3.60E-16

4.87E-13

4

GO:0009628

Response to abiotic stimulus

3421

213

125.6

1.60E-15

1.73E-12

3

GO:0006091

Generation of precursor metabolites and energy

524

59

19.24

2.30E-14

2.08E-11

4

GO:0055114

Oxidation-reduction process

2625

171

96.37

4.40E-14

3.40E-11

4

GO:0044711

Single-organism biosynthetic process

2955

186

108.49

6.40E-14

4.15E-11

4

GO:0050896

Response to stimulus

9671

465

355.06

6.90E-14

4.15E-11

2

GO:0042221

Response to chemical

4843

267

177.81

4.00E-13

2.17E-10

3

GO:0044550

Secondary metabolite biosynthetic process

489

54

17.95

6.50E-13

3.20E-10

5

GO:0019748

Secondary metabolic process

692

66

25.41

1.60E-12

7.22E-10

4

GO:0044710

Single-organism metabolic process

7483

372

274.73

2.90E-12

1.21E-09

3

GO:0009765

Photosynthesis, light harvesting

71

19

2.61

6.40E-12

2.48E-09

5

GO:0043436

Oxoacid metabolic process

2061

136

75.67

1.20E-11

4.33E-09

5