Table 2 Genes in the Physalis chloroplast genomes

Self-replication

Large subunit of ribosome

①*rpl2(×2), rpl14, *rpl16, rpl20, rpl22, rpl23(× 2), rpl32, rpl33, rpl36

DNA dependent RNA polymerase

rpoA, rpoB, *rpoC1, rpoC2

Small subunit of ribosome

rps2, rps3, rps4, rps7(×2), rps8, rps11, *rps12(× 2), rps14, rps15, *rps16, rps18, rps19

rRNA Genes

rrn4.5S(×2), rrn5S(× 2), rrn16S(× 2), rrn23S(× 2)

tRNA Genes

*trnA-UGC(×2), trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, *trnG-GCC, trnG-UCC, trnH-GUG, *trnI-GAU(× 2), trnI-CAU(× 2), *trnK-UUU, trnL-CAA(× 2), *trnL-UAA, trnL-UAG, trnM-CAU, trnN-GUU(× 2), trnP-UGG, trnQ-UUG, trnR-ACG(× 2), trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-GAC(× 2), *trnV-UAC, trnW-CCA, trnY-GUA

Photosynthesis

Subunits of ATP synthase

atpA, atpB, atpE, *atpF, atpH, atpI

Subunits of NADH-dehydrogenase

*ndhA, *ndhB(×2), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

Subunits of cytochrome b/f complex

petA, *petB, petD, petG, petL, petN

Subunits of photosystem I

psaA, psaB, psaC, psaI, psaJ, ycf4

Subunits of photosystem II

psbA, ②psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, ③psbZ

Subunit of rubisco

rbcL

Other genes

LhbA

④lhbA

Subunit of Acetyl-CoA-carboxylase

accD

c-type cytochrom synthesis gene

ccsA

Envelop membrane protein

cemA

Protease

**clpP

Translational initiation factor

infA

Maturase

matK

Unknown function

Conserved open reading frames

ycf1, ycf2(×2), **ycf3, ycf15(×2)