Genome-wide identification of the amino acid permease genes and molecular characterization of their transcriptional responses to various nutrient stresses in allotetraploid rapeseed

Zhou, Ting; Yue, Cai-peng; Huang, Jin-yong; Cui, Jia-qian; Liu, Ying; Wang, Wen-ming; Tian, Chuang; Hua, Ying-peng

doi:10.1186/s12870-020-02367-7

Table 2 Molecular characterization of the amino acid permease (AAP) genes in Arabidopsis thaliana and Brassica napus

From: Genome-wide identification of the amino acid permease genes and molecular characterization of their transcriptional responses to various nutrient stresses in allotetraploid rapeseed

Gene ID	Gene name	Block	CDS (bp)	Exon/ intron	Amino acid (aa)	Ka	Ks	Ka/Ks	Divergent time (Mya)
At1g58360	AtAAP1	D	1458	6/5	485
BnaA01g21750D	BnaA1.AAP1	D	1524	6/5	507	0.0394	0.3931	0.1002	13.10
BnaA03g59400D	BnaA3.AAP1	D	1623	8/7	540	0.0565	0.3987	0.1417	13.29
BnaA09g14700D	BnaA9.AAP1	D	1440	6/5	479	0.0466	0.4043	0.1153	13.48
BnaC01g42990D	BnaC1.AAP1	D	1524	6/5	507	0.0405	0.3747	0.1081	12.49
BnaC04g18440D	BnaC4.AAP1	D	1455	6/5	484	0.0489	0.3854	0.1269	12.85
BnaCnng25620D	BnaCn.AAP1	D	1440	6/5	479	0.0489	0.3965	0.1233	13.22
At5g09220	AtAAP2	R	1482	6/5	493
BnaA03g02650D	BnaA3.AAP2	R	1464	7/6	487	0.0293	0.4707	0.0622	15.69
BnaA10g22670D	BnaA10.AAP2	R	1458	6/5	485	0.0366	0.5027	0.0728	16.76
BnaC03g03750D	BnaC3.AAP2	R	1464	6/5	487	0.0313	0.4676	0.0669	15.59
BnaC09g47230D	BnaC9.AAP2	R	1458	6/5	485	0.0437	0.4787	0.0913	15.96
At1g77380	AtAAP3	E	1431	7/6	476
BnaA07g33510D	BnaA7.AAP3	E	1431	7/6	476	0.0374	0.3945	0.0948	13.15
BnaC06g38080D	BnaC6.AAP3a	E	1431	7/6	476	0.0386	0.3865	0.0999	12.88
BnaC06g38090D	BnaC6.AAP3b	E	1431	7/6	476	0.0408	0.3847	0.1061	12.82
At5g63850	AtAAP4	X	1401	6/5	466
BnaA02g33930D	BnaA2.AAP4	X	1401	6/5	466	0.0304	0.5479	0.0555	18.26
BnaA06g22970D	BnaA6.AAP4	X	1401	5/4	466	0.0392	0.4567	0.0858	15.22
BnaC02g42740D	BnaC2.AAP4	X	1401	5/4	466	0.0306	0.5398	0.0567	17.99
BnaC03g50500D	BnaC3.AAP4	X	1401	5/4	466	0.0423	0.4367	0.0969	14.56
At1g44100	AtAAP5	C	1443	5/4	480
BnaAnng17090D	BnaAn.AAP5	C	1248	4/3	415	0.0804	0.4964	0.1620	16.55
BnaA08g04440D	BnaA8.AAP5	C	1446	5/4	481	0.0840	0.5449	0.1542	18.16
BnaA05g18660D	BnaA5.AAP5	C	1464	5/4	487	0.0801	0.5204	0.1539	17.35
BnaA10g08840D	BnaA10.AAP5	C	1431	5/4	476	0.1206	0.5015	0.2405	16.72
BnaC06g00580D	BnaC6.AAP5	C	1431	5/4	476	0.1149	0.4909	0.2341	16.36
At5g49630	AtAAP6	W	1446	6/5	481
BnaCnng14480D	BnaCn.AAP6	W	1440	6/5	479	0.0560	0.4756	0.1177	15.85
At5g23810	AtAAP7	Q	1404	6/5	467
BnaA09g05130D	BnaA9.AAP7	Q	1413	7/6	470	0.1092	0.3543	0.3082	11.81
BnaC09g04700D	BnaC9.AAP7	Q	1059	6/5	352	0.1169	0.3813	0.3066	12.71
At1g10010	AtAAP8	A	1428	6/5	475
BnaA06g38000D	BnaA6.AAP8a	A	1401	6/5	466	0.1387	0.4977	0.2787	16.59
BnaA06g38010D	BnaA6.AAP8b	A	1389	6/5	462	0.1385	0.5880	0.2355	19.60
BnaA09g57230D	BnaA9.AAP8a	A	1446	6/5	481	0.1387	0.4977	0.2787	16.59
BnaA09g57240D	BnaA9.AAP8b	A	1584	6/5	527	0.1385	0.5880	0.2355	19.60
BnaC05g49200D	BnaC5.AAP8a	A	1410	7/6	469	0.1361	0.5426	0.2508	18.09
BnaC05g49210D	BnaC5.AAP8b	A	1449	6/5	482	0.1385	0.5880	0.2355	19.60
BnaC08g42410D	BnaC8.AAP8a	A	1446	6/5	481	0.1508	0.2216	0.6805	7.39
BnaC08g42420D	BnaC8.AAP8b	A	1515	7/6	504	0.1463	0.5326	0.2747	17.75
BnaC08g42430D	BnaC8.AAP8c	A	1446	6/5	481	0.1321	0.5257	0.2513	17.52

Note: CDS coding sequence, Ka non-synonymous nucleotide substitution rate, Ks synonymous nucleotide substitution rate

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