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Table 3 DArTseq markers having significant association with Striga-adaptive traits of 132 inbred lines evaluated under Striga-infested and Striga-free conditions at Mokwa across years 2017 and 2018

From: Genome-wide association study of Striga resistance in early maturing white tropical maize inbred lines

Trait

SNP

Chr

Position

P-value

Marker R2

Striga-infested conditions

 Grain yield

S10_96,965,850

10

96,965,850

4.95 × 10−4

0.343

S9_7,249,203

9

7,249,203

5.25 × 10−4

0.342

S10_133,224,759

10

133,224,759

8.43 × 10−4

0.336

 Ears per plant

S5_207,493,972

5

207,493,972

1.04 × 10−4

0.130

S7_137,739,978

7

137,739,978

1.21 × 10− 4

0.127

S10_16,561,232

10

16,561,232

2.16 × 10−4

0.118

S7_140,475,074

7

140,475,074

6.08 × 10−4

0.101

S10_16,804,228

10

16,804,228

8.98 × 10−4

0.095

S5_215,584,703

5

215,584,703

9.44 × 10−4

0.094

S4_76,136,186

4

76,136,186

9.81 × 10−4

0.094

Striga damage at 8 WAP

S10_133,224,759

10

133,224,759

4.41 × 10−5

0.420

S7_79,624,222

7

79,624,222

5.14 × 10−4

0.393

S8_52,394,249

8

52,394,249

5.94 × 10−4

0.391

S10_112,661,466

10

112,661,466

8.01 × 10−4

0.388

S3_179,448,461

3

179,448,461

9.91 × 10−4

0.385

Striga damage at 10 WAP

S10_133,224,759

10

133,224,759

3.55 × 10−5

0.333

S10_112,661,466

10

112,661,466

1.88 × 10−4

0.311

S3_179,448,461

3

179,448,461

2.61 × 10−4

0.307

S1_9,730,753

1

9,730,753

3.75 × 10−4

0.303

S3_47,343,213

3

47,343,213

4.32 × 10−4

0.301

S3_143,135,181

3

143,135,181

4.60 × 10−4

0.300

S9_154,978,426

9

154,978,426

8.99 × 10−4

0.292

Striga count at 8 WAP

S1_102,219,766

1

102,219,766

3.42 × 10−4

0.221

 Ear aspect

S10_144,129,548

10

144,129,548

5.94 × 10−4

0.258

Striga-free conditions

 Grain yield

S4_177,968,538

4

177,968,538

8.09 × 10−4

0.148

S3_188,682,443

3

188,682,443

9.12 × 10−4

0.141

 Ears per plant

S2_210,201,646

2

210,201,646

6.86 × 10−4

0.143

S8_145,372,017

8

145,372,017

7.55 × 10−4

0.132

S1_67,606,758

1

67,606,758

8.57 × 10−4

0.130

S1_68,549,674

1

68,549,674

9.07 × 10−4

0.129

 Ear aspect

S8_96,677,591

8

96,677,591

4.00 × 10−4

0.207

S6_97,507,107

6

97,507,107

5.74 × 10−4

0.235

S3_176,205,016

3

176,205,016

5.57 × 10−4

0.203

S8_161,625,705

8

161,625,705

6.00 × 10−4

0.201

S6_108,391,162

6

108,391,162

9.98 × 10−4

0.194