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Table 2 Numbers of contigs identified in de novo transcriptome assembly of susceptible and resistant S. phureja genotypes at various TPM threshold values

From: The mechanism of potato resistance to Globodera rostochiensis: comparison of root transcriptomes of resistant and susceptible Solanum phureja genotypes

TPM threshold

Susceptible genotype

Resistant genotype

Total contigs

Novel contigs

novel contigs with predicted Pfam domains

Total contigs

Novel contigs

novel contigs with predicted Pfam domains

1

66,664

7915

4817

54,866

11,269

6017

2

53,094

4233

2520

41,481

6139

3249

3

46,289

3038

1757

35,620

4571

2338

4

41,682

2424

1370

31,810

3795

1889

5

38,152

2025

1131

28,950

3301

1593