Genome-wide association study of leaf rust resistance in Russian spring wheat varieties

BMC Plant Biology

Table 3 List and chromosomal localization of SNPs significantly associated with resistance to leaf rust

Marker	SNP ID	Chromosome^a	Position, cM*	Allele^b	P value MLM-1/MLM-2	R^{2 c}	Effect
BS00063175_51	IWB9015	6DL	84.54	G/A	2.02E-05/4.81E-09	0.22–0.27	−3.4
BobWhite_c13435_700	IWB505	6DL	149.85		5.69E-08/9.48E-09	0.32–0.48	−3.90
BS00070856_51	IWB10505	6DL	153.07		2.83E-05/8.3E-06	0.18–0.29	−2.86
GENE-4153_101	IWB33802	6DL	82.14		7.37E-06/1.87E-06	0.20–0.27	−2.96
D_GB5Y7FA02G6KBX_382	IWB18070	6DL	83.75		9.71E-06/1.2E-06	0.22–0.27	−3.18
IAAV8633	IWB35508	6AS	3.43	T/C	1.80E-04/1.58E-07	0.11–0.20	−1.64
BS00037006_51	IWB8079	6АL	83.73	C/A	2.58E-05/2.31E-08	0.09–0.13	−1.52
wsnp_Ex_rep_c69526_68472787	IWA5615	5AS	35.94	T/G	6.05E-06/1.70E-13	0.24–0.27	−3.16
GENE-3321_201	IWB33331	5AS	36.72	A/C	6.05E-06/1.07E-13	0.24–0.27	−3.16
Kukri_c8835_112	IWB48151	5AS	36.58	T/C	6.05E-06/1.07E-13	0.20–0.27	−3.12
BS00094095_51	IWB11853	5AS	36.87	T/C	6.05E-06/1.45E-09	0.22–0.29	−2.48
tplb0023b14_704	IWB74145	1BL	70.07	T/G	2.15E-06/1.45E-09	0.17–0.26	−0.62
wsnp_Ra_c8484_14372815	IWA8082	1BL	69.76	C/T	2.15E-06/1.45E-09	0.17–0.26	−0.62
TA004947–0758	IWB65906	1BL	66.07	C/A	9.28E-06/2.54E-06	0.16–0.22	−0.64
BobWhite_c1456_615	IWB669	1BL	64.89	C/A	1.06E-05/2.04E-06	0.15–0.19	−0.58
RAC875_c8849_134	IWB60932	1BS	62.84	C/T	3.87E-05/9.78E-06	0.07–0.12	−0.31
wsnp_Ku_rep_c71900_71624324	IWA7504	1BS	–	A/G	1.15E-04/5.09E-06	0.08–0.12	−0.16
IAAV2452	IWB34561	1BS	62.63	T/C	3.49E-04/8.40E-06	0.04–0.09	−0.30
Excalibur_c18514_238	IWB23156	2AL	144.13	G/T	3.31E-05/5.68E-07	0.15–0.20	−0.87
Excalibur_c48404_59	IWB26954	2ВL	161.41	T/C	3.79E-05/8.25E-06	0.10–0.13	−0.54

^alocalization and marker position on the chromosome are indicated according to the consensus maps of wheat (T. aestivum L.) presented in [30] and Triticeae Toolbox database (https://triticeaetoolbox.org/)
^bfavorable alleles are highlighted in bold;
^cR² indicates phenotypic variation explained by the significant locus in different environments

ISSN: 1471-2229