Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta)

Laporte, Daniel; Rodríguez, Felipe; González, Alberto; Zúñiga, Antonio; Castro-Nallar, Eduardo; Sáez, Claudio A.; Moenne, Alejandra

doi:10.1186/s12870-019-2229-5

Table 1 Up-regulated genes related to photosynthesis and mitochondrial electron transport chain

From: Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta)

Process	ID Transcript	Proteins	Log2 Fold Change
PSII	Unigene17497_All	PsbA	3.4
	CL2571.Contig1_All	PsbB	2.0
	CL11753.Contig1_All	PsbB	2.4
	CL11753.Contig2_All	PsbB	4.5
	Unigene33413_All	PsbC	3.3
	CL4160.Contig3_All	PsbE	2.6
	Unigene34274_All	PsbH	3.3
	Unigene29880_All	PsbN	3.3
	Unigene13168_All	PsbO	1.6
	Unigene29944_All	PsbP	2.1
	CL7636.Contig1_All	PsbP	1.2
	CL699.Contig2_All	PsbP	2.3
	CL4419.Contig1_All	PsbP	1.8
	CL4419.Contig5_All	PsbP	1.2
	CL3599.Contig1_All	PsbR	2.0
	CL10892.Contig2_All	PsbS	3.6
	Unigene33763_All	PsbW	5.3
	Unigene37851_All	PsbY	1.6
	Unigene1513_All	PsbZ	2.5
LHCII	Unigene596_All	Chlorophyll a-b binding protein 1D (lhcB1)	2.6
	CL4261.Contig2_All	Chlorophyll a-b binding protein CP26 (lhcB5)	1.4
	CL11211.Contig2_All	Chlorophyll a-b binding protein CP26 (lhcB5)	1.9
	CL1500.Contig3_All	Chlorophyll a-b binding protein L1818 (lhcb4)	4.3
	CL4399.Contig3_All	Chlorophyll a-b binding protein L1818 (lhcb4)	6.8
	CL9440.Contig1_All	Chlorophyll a-b binding protein L1818 (lhcb4)	3.0
	CL9440.Contig2_All	Chlorophyll a-b binding protein L1818 (lhcb4)	4.7
	Unigene29850_All	Chlorophyll a-b binding protein L1818 (lhcb4)	1.5
	CL1500.Contig2_All	Chlorophyll a-b binding protein L1818 (lhcb4)	2.5
	CL4399.Contig1_All	Chlorophyll a-b binding protein L1818 (lhcb4)	1.4
	CL12301.Contig27_All	Chlorophyll a-b binding protein Type I (CabII-1)	2.9
	CL12301.Contig28_All	Chlorophyll a-b binding protein Type I (CabII-1)	2.5
	Unigene22628_All	Fucoxanthin-chlorophyll a-c binding protein (FcpA)	1.0
	CL941.Contig8_All	Fucoxanthin-chlorophyll a-c binding protein (FcpE)	2.4
	CL2528.Contig4_All	Magnesium-chelatase subunit ChlD	1.8
Cyt b6-f	Unigene41646_All	Iron-sulfur subunit (petB)	1.8
	CL2893.Contig2_All	Iron-sulfur subunit (petC)	1.5
	CL2893.Contig4_All	Iron-sulfur subunit (petC)	3.7
	CL2893.Contig6_All	Iron-sulfur subunit (petC)	5.7
	CL2893.Contig9_All	Iron-sulfur subunit (petC)	1.1
	CL2893.Contig10_All	Iron-sulfur subunit (petC)	4.9
	Unigene174_All	Iron-sulfur subunit (petC)	2.5
	Unigene970_All	Iron-sulfur subunit (petG)	2.5
	Unigene33787_All	Iron-sulfur subunit (petJ)	2.1
PSI	Unigene61010_All	PsaA	7.7
	Unigene955_All	PsaD	1.6
	Unigene21099_All	PsaF	1.3
	Unigene38056_All	PsaG	3.3
	Unigene25315_All	PsaL	1.3
LHC I ATP synthase	CL11079.Contig2_All	Chlorophyll a-b binding protein 5 (LhcA1 like)	3.4
	Unigene33050_All	ATP synthase subunit alpha	2.8
	CL10342.Contig2_All	ATP synthase subunit alpha	2.6
	Unigene28940_All	ATP synthase subunit alpha	1.4
	Unigene21967_All	ATP synthase subunit alpha	2.7
	CL5620.Contig2_All	ATP synthase subunit alpha	2.8
	CL10342.Contig6_All	ATP synthase subunit alpha	1.4
	CL2062.Contig2_All	ATP synthase subunit beta	8.1
	Unigene284_All	ATP synthase subunit beta	1.3
	Unigene283_All	ATP synthase subunit beta	1.9
	Unigene286_All	ATP synthase subunit beta	4.1
	CL2062.Contig1_All	ATP synthase subunit beta	1.2
	Unigene33306_All	ATP synthase subunit beta	2.1
	CL4160.Contig1_All	ATP synthase subunit beta	3.9
	Unigene19914_All	ATP synthase subunit beta	2.4
	CL5278.Contig5_All	ATP synthase subunit gamma	1.4
	Unigene16523_All	ATP synthase subunit gamma	2.2
	CL5278.Contig5_All	ATP synthase subunit gamma	1.4
	CL5278.Contig10_All	ATP synthase subunit gamma	1.4
	Unigene16523_All	ATP synthase subunit gamma	2.2
	Unigene32932_All	ATP synthase subunit epsilon	1.0
	Unigene43520_All	ATP synthase subunit delta	2.4
Assembly and Repair of PS II	Unigene29539_All	Met1	5.6
	CL1106.Contig1_All	Deg/HtrA Protease Do-like 1	4.2
	CL1106.Contig2_All	Deg/HtrA Protease Do-like 1	2.6
	CL1106.Contig5_All	Deg/HtrA Protease Do-like 1	4.5
	CL1106.Contig7_All	Deg/HtrA Protease Do-like 1	2.1
	CL1106.Contig8_All	Deg/HtrA Protease Do-like 1	2.5
	CL1106.Contig9_All	Deg/HtrA Protease Do-like 1	2.4
	CL1106.Contig13_All	Deg/HtrA Protease Do-like 1	2.6
	CL3921.Contig1_All	Deg/HtrA Protease Do-like 1	3.6
	CL3921.Contig3_All	Deg/HtrA Protease Do-like 1	2.0
	CL6287.Contig3_All	Deg/HtrA Protease Do-like 2	1.4
	CL6287.Contig4_All	Deg/HtrA Protease Do-like 2	1.0
	Unigene12439_All	Deg/HtrA Protease Do-like 9	1.0
	Unigene12443_All	Deg/HtrA Protease Do-like 9	1.1
	Unigene7791_All	ATP-dependent zinc metalloprotease FtsH1	1.5
	Unigene9549_All	ATP-dependent zinc metalloprotease FtsH1	1.1
	Unigene71521_All	ATP-dependent zinc metalloprotease FtsH1	3.1
	Unigene36205_All	ATP-dependent zinc metalloprotease FtsH1	9.1
	CL8065.Contig1_All	ATP-dependent zinc metalloprotease FtsH2	2.5
	Unigene16464_All	ATP-dependent zinc metalloprotease FtsH11	2.1
	CL6915.Contig1_All	ABC1K1	3.2
	CL6915.Contig7_All	ABC1K1	3.8
	CL12141.Contig2_All	2-carboxy-1,4-naphthoquinone phytyltransferase	2.3
	CL12141.Contig5_All	2-carboxy-1,4-naphthoquinone phytyltransferase	2.1
Assembly and Protection PSI	Unigene778_All	PGR5 1A	6.4
	CL653.Contig10_All	Serine/threonine-protein kinase STN8	3.1
	CL653.Contig13_All	Serine/threonine-protein kinase STN8	3.2
	CL653.Contig38_All	Serine/threonine-protein kinase STN8	2.9
	Unigene13129_All	YCF12	3.1
	CL5916.Contig1_All	ATAB2	3.0
	CL5916.Contig2_All	ATAB2	3.6
Mitochondrial	CL2273.Contig1_All	NADH dehydrogenase subunit 1	3.2
Electron	Unigene75664_All	NADH dehydrogenase subunit 2	3.1
Transport	CL8189.Contig1_All	cytochrome bc1 complex subunit V	2.4
Chain	CL5196.Contig1_All	Cytochrome bc1 complex subunit IV	2.8
	Unigene965_All	Cytochrome bc1 complex subunit IV	3.1
	Unigene30266_All	ATP synthase subunit gamma	3.1

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ISSN: 1471-2229

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