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Table 1 KEGG pathway enrichment of 5638 DEGs

From: Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

Pathway ID Pathway Number of DEGs P-value Q-value
ko04626 Plant-pathogen interaction 376 2.57E-51 3.47E-49
ko04016 MAPK signalling pathway-plant 304 2.77E-25 1.87E-23
ko00941 Flavonoid biosynthesis 57 4.37E-08 1.97E-06
ko00940 Phenylpropanoid biosynthesis 135 1.80E-07 6.06E-06
ko00052 Galactose metabolism 88 6.14E-06 0.000166
ko00590 Arachidonic acid metabolism 34 2.09E-05 0.000469
ko00906 Carotenoid biosynthesis 39 0.000109 0.002102
ko00480 Glutathione metabolism 68 0.000138 0.002331
ko00909 Sesquiterpenoid and triterpenoid biosynthesis 21 0.000332 0.004976
ko00591 Linoleic acid metabolism 22 0.000788 0.010643
ko00511 Other glycan degradation 42 0.001074 0.013183
ko00604 Glycosphingolipid biosynthesis - ganglio series 27 0.001366 0.015371
ko00905 Brassinosteroid biosynthesis 15 0.001554 0.016135
ko00904 Diterpenoid biosynthesis 36 0.003500 0.033752
ko00600 Sphingolipid metabolism 44 0.004324 0.038919
  1. Pathways with a corrected-p (Q-value) < 0.05 are shown