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Table 1 KEGG pathway enrichment of 5638 DEGs

From: Transcriptome analysis reveals the defense mechanism of cotton against Verticillium dahliae in the presence of the biocontrol fungus Chaetomium globosum CEF-082

Pathway ID

Pathway

Number of DEGs

P-value

Q-value

ko04626

Plant-pathogen interaction

376

2.57E-51

3.47E-49

ko04016

MAPK signalling pathway-plant

304

2.77E-25

1.87E-23

ko00941

Flavonoid biosynthesis

57

4.37E-08

1.97E-06

ko00940

Phenylpropanoid biosynthesis

135

1.80E-07

6.06E-06

ko00052

Galactose metabolism

88

6.14E-06

0.000166

ko00590

Arachidonic acid metabolism

34

2.09E-05

0.000469

ko00906

Carotenoid biosynthesis

39

0.000109

0.002102

ko00480

Glutathione metabolism

68

0.000138

0.002331

ko00909

Sesquiterpenoid and triterpenoid biosynthesis

21

0.000332

0.004976

ko00591

Linoleic acid metabolism

22

0.000788

0.010643

ko00511

Other glycan degradation

42

0.001074

0.013183

ko00604

Glycosphingolipid biosynthesis - ganglio series

27

0.001366

0.015371

ko00905

Brassinosteroid biosynthesis

15

0.001554

0.016135

ko00904

Diterpenoid biosynthesis

36

0.003500

0.033752

ko00600

Sphingolipid metabolism

44

0.004324

0.038919

  1. Pathways with a corrected-p (Q-value) < 0.05 are shown