Table 2 Significant marker-trait associations, candidate genes and corresponding putative functions for continuous storage formation and bulking (CSRFAB) and discontinuous storage root formation and bulking (DCSRFAB)
Variants1 | P-value | R2 | Allele effect | maf3 | Orthologs | Putative function |
|---|---|---|---|---|---|---|
Continuous Storage Formation and Bulking (CSRFAB; 150 DAP) | ||||||
 Chr04_6057850 | 3.7E-47 | 0.8 | 0.14 | 0.24 | Cellulose synthase-like D1 | Root hair development. |
 Chr12_903336 | 4.8E-33 | 0.5 | 0.35 | 0.39 | Nudix hydrolase | Excessive cell stimulation and stress response. |
 Chr01_30468732 | 1.4E-28 | 0.41 | −0.27 | 0.37 | P-loop containing nucleoside triphosphate hydrolases | Regulates senescence, cell death and stress. |
 Chr09_6258404 | 8.8E-28 | 0.4 | −0.19 | 0.15 | Calmodulin Interacting protein | Regulates plant shoot branching. |
 Chr02_16003392 | 4.8E-20 | 0.27 | 0.04 | 0.49 | HVA22 homologue A | Stress-induced programmed cell death. |
 Chr08_14465821 | 8.6 E-06 | 0.12 | 0.16 | 0.03 | Pectin lyase-like | Cell wall remodeling, growth and senescence. |
 Chr06_13670137 | 3.2E-10 | 0.12 | 0.13 | 0.49 | Aminopeptidase M1 | Plant growth, leaf longevity and stress response. |
 Chr07_3326491 | 3.5E-10 | 0.12 | 0.36 | 0.04 | KAKU4 | Modulates nuclear morphology |
 Chr11_18261627 | 5.6E-09 | 0.1 | 0.10 | 0.49 | Putative recombination initiation defect | Meiotic recombination |
 Chr03_18988293 | 1.5E-08 | 0.09 | −0.09 | 0.50 | Senescence-associated gene | Programmed cell death |
 Chr14_3298542 | 1.3E-07 | 0.08 | 0.27 | 0.49 | CLAVATA3/ESR-RELATED | Meristem maintenance |
 Chr11_1919638 | 3.3E-07 | 0.08 | 0.16 | 0.49 | MAP 3 K-like | Plant growth, development and stress response. |
 Chr10_13852642 | 3.8E-07 | 0.08 | 0.12 | 0.50 | nuclear factor Y, subunit B4 | Plant growth, development and stress response. |
Discontinuous Storage Formation and Bulking (DCSRFAB; 90 DAP) | ||||||
 Chr03_18599676 | 1.10E-07 | 0.1 | −0.18 | 0.14 | Thioredoxin z | Reduction of oxidative stress. |
 Chr09_299562 | 2.30E-08 | 0.1 | −0.02 | 0.11 | DUF803 | Unknown protein |
 Chr11_14588348 | 6.20E-07 | 0.09 | −0.03 | 0.17 | hypothetical | Reduction oxidative stress. |
 Chr03_18916775 | 9.30E-07 | 0.08 | 0.04 | 0.49 | AGC-Kinase | auxin-induced lateral root formation. |
 Chr06_2448368 | 4.6 E-08 | 0.08 | −0.24 | 0.27 | GBLD | Stress, signal transduction. |