7080 | 16-PJ-3 | Offspring (average) | Total | |
---|---|---|---|---|
Clean reads | ||||
AANo. of reads | 33,078,367 | 32,809,373 | 4,487,195 | |
GC (%) | 35.93 | 36.81 | 37.12 | 37.09 |
Q30 (%) | 93.89 | 94.24 | 92.51 | 92.61 |
Average depth (×) | 10.47 | 10.09 | 1.30 | |
Initial variable sites | ||||
No. of SNPs | 11,605,507 | 13,221,020 | 1,492,295 | 22,319,406 |
No. of InDels | 1,307,918 | 1,428,832 | 147,808 | 1,593,074 |
Markers on the map | ||||
No. of markers | 6023 | 4710 | 9593 | |
Average depth (×) | 13.70 | 12.86 | 13.46 |