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Table 1 Summary of RAD-seq and re-sequence data

From: Construction of a high-density genetic map and QTL mapping of leaf traits and plant growth in an interspecific F1 population of Catalpa bungei × Catalpa duclouxii Dode

 

7080

16-PJ-3

Offspring (average)

Total

Clean reads

 AANo. of reads

33,078,367

32,809,373

4,487,195

 

 GC (%)

35.93

36.81

37.12

37.09

 Q30 (%)

93.89

94.24

92.51

92.61

 Average depth (×)

10.47

10.09

1.30

 

Initial variable sites

 No. of SNPs

11,605,507

13,221,020

1,492,295

22,319,406

 No. of InDels

1,307,918

1,428,832

147,808

1,593,074

Markers on the map

 No. of markers

6023

4710

9593

 

 Average depth (×)

13.70

12.86

13.46